User:David E. Volk: Difference between revisions

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#[[Bioinformatics]]
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Revision as of 12:39, 9 February 2008

Hourglass drawing.svg Where David lives it is approximately: 13:50

All truth passes through three stages:

  • First, it is ridiculed.
  • Second, it is violently opposed.
  • Third, it is accepted as being self-evident
Arthur Schopenhauer (1788-1860)


My user plan

David E. Volk Status    last updated January 24, 2008    [edit plan here] Get your own infobox!Group Status
~ Plans ~
Short term plans
1. antibiotics articles
2. decide what goes into chem_infobox
3. biosynthesis sections for all 20 amino acids
Longer-term plans
1. Work on more Music articles
2. Work on steroid and all related articles
~ Roles and notes ~
Roles in the system
1. Editorial Council member
2. Editorial Personnel Administrator (EPA)
3. Chemistry Editor/Author
4. Biology Editor/Author
5. Music Author
Notes to self
Click edit above to start these notes
Public notes :

 

Chemistry Workgroup    Status    last updated January 21, 2008    [edit plan here]
~ Plans ~
My short-term plans
1. improve amino acid pages, biosynthesis
2. improve steroid and improve/create related pages
My longer-term plans
1. create pages all major metabolism cycles, reactions
~ Roles and Notes ~
My roles
1. Editor
2. Author
3. "Checklister"
My notes
1. finish amino acid synthesis text and structures
Public notes: Wish to make pages for all major metabolic pathways and chemicals therein. Also, we need pages, with help from Health Sciences folks, for every prescription drug available.


Chemistry / Health Sciences Articles I Started -part 1

  1. Abacavir
  2. Acetaldehyde
  3. Acetaminophen
  4. Acetic acid
  5. Acetone
  6. Acid
  7. Acyclovir
  8. Alanine
  9. Aldosterone
  10. Amikacin
  11. Aminoglycoside
  12. Ampicillin
  13. Amprenavir
  14. Amoxicillin
  15. Androstenedione
  16. Anion
  17. Antiviral drug
  18. Arginine
  19. Aristolochic acid
  20. Arthralgia
  21. Arthrodynia
  22. Aspartic acid
  23. Asparagine
  24. Atazanavir (AZT)
  25. Atorvastatin (Lipitor)
  26. Azathioprine
  27. Azlocillin
  28. Azole
  29. Bioinformatics
  30. Boron
  31. Boyle's law
  32. Carboxylic acid
  33. Carnitine
  34. Cerivastatin
  35. Chorismate
  36. Cidofovir
  37. Clofibrate
  38. Colestipol
  39. Cortisol
  40. Cross product
  41. Cysteine
  42. Cystine
  43. Diazinon
  44. DEET
  45. Delavirdine
  46. Deuterium
  47. Didanosine
  48. Efavirenz
  49. Enantiomer
  50. Entecavir
  51. Eplerenone
  52. Ester
  53. Estradiol
  54. Estrogen
  55. Ether
  56. Ezetimibe
  57. Famciclovir

  1. Fenofibrate
  2. Folic acid
  3. Fosfomycin
  4. Flavivirus
  5. Fluvastatin
  6. Fuming sulfuric acid
  7. GABA
  8. Gemfibrozil
  9. Glucose
  10. Glutamic acid
  11. Glutamine
  12. Hexose
  13. Hippurate
  14. Histidine
  15. Hydrocortisone
  16. HMG CoA
  17. Hydrogen/Isotopes
  18. Ideal gas law
  19. Idoxuridine
  20. Indinavir
  21. Iron/Isotopes
  22. Isoleucine
  23. Lamivudine
  24. Leflunomide
  25. Leucine
  26. Lewis acid
  27. Lewis acid-base theory
  28. List of NMR experiments
  29. Lovastatin
  30. Lysine
  31. Mesalamine
  32. Methionine
  33. Methotrexate
  34. Mevalonate
  35. Mevastatin
  36. Midodrine
  37. Minocycline
  38. NADPH
  39. nelfinavir
  40. Netilmicin
  41. Nitroglycerin
  42. Nitromethane
  43. Neuralgia
  44. Oseltamivir
  45. NMR active elements
  46. Penciclovir
  47. Phenylalanine
  48. Phosphate
  49. Phosphoric acid
  50. Phosphorus
  51. Pravastatin
  52. Prednisone
  53. Prednisolone
  54. Progesterone

Chemistry / Health Sciences Articles I Started -part 2

  1. Proline
  2. Protease inhibitor
  3. Protein structure
  4. Rhabdomyolysis
  5. Ribavirin
  6. Rimantadine
  7. Ritonavir
  8. Rosuvastatin (Crestor)
  9. Saquinavir
  10. Serine
  11. Simvastatin
  12. Spironolactone
  13. Stavudine
  14. Steroid
  15. Streptomycin
  16. Sulfasalazine
  17. Sulfur dioxide
  18. Sulfuric acid
  19. Tenofovir
  20. Testosterone
  21. Tipranavir
  22. Threonine
  23. Tryptophan
  24. Tyrosine
  25. Valine
  26. Warfarin
  27. West Nile virus
  28. Zalcitabine
  29. Zanamivir


Music Article I Created

  1. Cover band
  2. Rex Bell
  3. Rex Bell/Discography
  4. REO Speedwagon
  5. REO Speedwagon/Discography
  6. Rush
  7. Hayes Carll
  8. Townes Van Zandt
  9. Townes Van Zandt/Discography (this was work!)

Other Articles I Created

  1. Kim Komando
  2. Kirchhoff's current law
  3. Kirchhoff's voltage law
  4. Law of cosines
  5. Law of sines
  6. Texas Hold 'Em

Areas of Expertise

  1. Nuclear Magnetic Resonance (NMR) spectroscopy
    1. Protein NMR Structures
      1. West Nile virus ED3
      2. Omsk Hemorhagic fever ED3
      3. Dengue 4 virus
      4. Yellow fever virus
    2. DNA Structures
      1. Benzo[a]pyrene-adducted (carcinogenic) DNA
      2. Oxidatively Damaged DNA
      3. Thioaptamer DNA
    3. Metabonomics/Metabolomics
  2. Quantum Mechanics
    1. DNA:DNA Interactions
    2. DNA:Metal Interactions
  3. Lewis Acid Chemistry
    1. AlCl3 and Et2AlCl mediated ring opening reactions
    2. SnCl4 mediated ring opening reactions
  4. Protein Expression & Purification
  5. Molecular Mechanics

Areas of General Competence

  • Physical/Organic Chemistry
  • Molecular Biology
  • Structural Biology
  • Physics
  • Mathematics
  • Computer Programming
    • Pascal
    • Perl
    • C++
  • MAcromolecular Purification Methods
  • Surface Plasmon Resonance (Biacore)
  • Binding thermodynamics and kinetics


Hobbies

  • Bass Guitar
  • Texas Holdem'
  • Bird Watching

Education & Background

David E. Volk holds a bachelors degree in mathematics and physics from Minot State (ND) University, and a Ph.D (1995) in physical organic chemistry from North Dakota State University. He completed a post-doctoral fellowship at Duke University Medical Center under Leonard Spicer and is currently a research scientist at the University of Texas Medical Branch in Galveston, TX. Currently his work focuses on studying the solution structures of DNA and proteins that are important to human health or diseases using nuclear magnetic resonance (NMR) spectroscopy. These studies involve the West Nile, Yellow Fever, Omsk Hemorhaggic Fever and Dengue fever viruses. Other studies involved both structure and quantum mechanics studies of damaged DNA, such as oxidized DNA or adducted DNA. Most recently, he has initiated many metabonomics studies at UTMB. Visit Dr. Volk's UTMB Page for more information and links to his publications.