User talk:Daniel Mietchen: Difference between revisions

From Citizendium
Jump to navigation Jump to search
imported>Chris Day
m (Text replacement - "Operation ODYSSEY DAWN" to "Operation Odyssey Dawn")
 
(673 intermediate revisions by 53 users not shown)
Line 1: Line 1:
{{Usertime-text|Daniel}}{{Template:Utc|+1}}
{{Usertime-text|Daniel}}{{Template:Utc|+2}}


=Notes to self=


==Bookmarks==
==Archives==
''more [[User:Daniel Mietchen/Notes to self|here]]''
{{Archive box|auto=long}}<br />
 
===Within CZ===
====Special pages====
*[[Special:PrefixIndex/CZ:Ref:|Provisional reference namespace]]
*[http://en.citizendium.org/wiki?title=Special:Recentchangeslinked&target=Category%3ABiology_Workgroup Recent changes in Biology]
*[http://en.citizendium.org/wiki?namespace=&target=biology&limit=500&hideminor=0&title=Special%3ARecentChangesLinked Recent changes linked to Biology article]
*[http://en.citizendium.org/wiki?title=Special:Recentchangeslinked&target=Category%3APhysics_Workgroup Recent changes in Physics]
*[http://en.citizendium.org/wiki?namespace=&target=physics&limit=500&hideminor=0&title=Special%3ARecentChangesLinked Recent changes linked to Physics article]
*[http://en.citizendium.org/wiki?title=Special:Recentchangeslinked&target=Category%3APsychology_Workgroup Recent changes in Psychology]
*[http://en.citizendium.org/wiki?namespace=&target=psychology&limit=500&hideminor=0&title=Special%3ARecentChangesLinked Recent changes linked to Psychology article]
*[http://en.citizendium.org/wiki?title=Special:Recentchangeslinked&target=Category%3AEduzendium Recent changes in Eduzendium]
*[http://en.citizendium.org/wiki?namespace=&target=CZ:Eduzendium&limit=500&hideminor=0&title=Special%3ARecentChangesLinked Recent changes linked to Eduzendium main page]
*[http://en.citizendium.org/wiki?title=Special:Recentchangeslinked&target=Category%3AHealth_Sciences_Workgroup Recent changes in Health Sciences]
*[http://en.citizendium.org/wiki?title=Special:Recentchangeslinked&target=Category%3AMusic_Workgroup Recent changes in Music]
*[http://en.citizendium.org/wiki?title=Special%3ALog&type=newusers&user=&page= New Users]
*[http://en.citizendium.org/wiki?title=Category:Biology_need_def Biology:Need def]
*[http://en.citizendium.org/wiki?title=Category:Physics_need_def Physics:Need def]
*[http://en.citizendium.org/wiki?title=Category:Psychology_need_def Psychology:Need def]
*[http://en.citizendium.org/wiki?title=Category:Eduzendium_need_def Eduzendium:Need def]
*[http://en.citizendium.org/wiki?title=Category:Health_Sciences_need_def Health Sciences:Need def]
*[http://en.citizendium.org/wiki?title=Category:Music_need_def Music:Need def]
*[http://en.citizendium.org/wiki/Special:Search?ns8=1&ns100=1&search=requestaccount&searchx=Search Pages related to Registration]
*[http://forum.citizendium.org/index.php?action=recent Recent forum posts]
*[[CZ:How to convert Wikipedia articles to Citizendium articles]]
*[http://en.citizendium.org/wiki/Special:NewImages New images]
*[http://en.citizendium.org/wiki/CZ:Start_Article New article without subpages]
*[http://en.citizendium.org/wiki/Special:PrefixIndex/CZ:Ref: Initial test with alternative way of reference formatting]
*[[CZ:Code]]
*[[User:Subpagination Bot]]
 
====Templates====
*[[CZ:Templates]]
*[[User:Anton_Sweeney/Sandbox/Articletemplate|Article template]]
*[[CZ:Images/Extensions/ImageMap|Image map]]
*[[Template:Click]]
*[[Template:Cquote]]
*[[Template:Workgroup navigation]]
 
====Images====
*[[CZ:Images]]
*Workgroup icons: [[Image:Natural science button.png|30px]] [[Image:Social science button.png|30px]] [[Image:Humanities button.png|30px]] [[Image:Arts button.png|30px]] [[Image:Applied arts button.png|30px]] [[Image:Recreation button.png|30px]]
*[[Biology/Gallery]]
*[[:Category:Galleries]]
 
===Within WP===
*[http://diberri.dyndns.org/cgi-bin/templatefiller/index.cgi?ddb=&type=hgnc_id&id=2475 Diberri:Bot-assisted medical template filling]
*[http://de.wikipedia.org/wiki/Benutzer:Reinerh/Vorlage:Zu_cool_f%C3%BCr_Encarta icon template]
*[http://en.wikipedia.org/wiki/User:DOI_bot DOI bot]
*[http://en.wikipedia.org/wiki/User:Smith609/Cite Reference wikification]
*[http://en.wikipedia.org/wiki/Image:Size_of_English_Wikipedia_broken_down.png Size of English Wikipedia broken down]
*[http://toolserver.org/~arnomane/cgi-bin/WP-autoreview.pl Wikipedia Autoreviewer (Beta Version)]
*[http://en.wikipedia.org/w/index.php?title=Special:WhatLinksHere/Template:Expert&limit=5000 Calls for experts]
*[http://en.wikipedia.org/wiki/Wikipedia:Most_vandalized_pages Most vandalized pages]
*[http://de.wikipedia.org/wiki/Spezial:Beitr%C3%A4ge/User959 examples for vandalism extending to non-controversial topics], e.g. [http://de.wikipedia.org/w/index.php?title=Kugelfl%C3%A4chenfunktionen&diff=prev&oldid=53216478 Kugelflächenfunktionen (spherical harmonics)]
*[http://en.wikipedia.org/wiki/Wikipedia:Provenance Source and temporal provenance (using color schemes)]. See also [http://www.firstmonday.org/issues/issue11_9/cross/ this post on color-coding reliability as a function of number of survived edits] and [http://trust.cse.ucsc.edu/ this tool] which actually implements it for any Wikimedia-powered wiki. Maybe something for CZ, too?
*[http://en.wikipedia.org/w/index.php?title=Special:LinkSearch&target=en.citizendium.org Links to CZ from WP (en)]
*[http://en.wikipedia.org/wiki/Wikipedia:Graphic_Lab Graphics Lab] - for anything concerning images
*[http://en.wikipedia.org/wiki/Template:Nutshell nutshell template]
*[http://en.wikipedia.org/wiki/Wikipedia:Math Math formatting]
*[http://en.wikipedia.org/wiki/Monotreme#Media animated image of an echidna]
*[http://en.wikipedia.org/wiki/Wikipedia:Village_pump_(technical)/Archive_39#Information_displayed_below_the_edit_window discussion of Special:LinksFromHere]
*[http://en.wikipedia.org/wiki/Wikipedia:Featured_articles Featured articles]
*[http://en.wikipedia.org/wiki/Wikipedia:Good_articles Good articles]
*[http://en.wikipedia.org/wiki/Wikipedia:Possibly_unfree_images Possibly unfree images]
 
===Other===
*Humorous ''[[Hörspiel]]'' on limited [[resource]]s of [[fossil energy]] (in [[German language|German]]):
<center>{{#ev:youtube|HqT_fokXsss}}</center>
*Public Domain Chemistry and Biology images at [http://www.chemistrypictures.org/ Chemistry Pictures]
*[http://tschiltan.de/ Tschiltan] demo trailer: <center>{{#ev:youtube|P_DO3YWEitY}}</center>
*[http://www.codecogs.com/components/equationeditor/equationeditor.php Web-based LaTeX equation editor]
*[http://www.worldzootoday.com/2008/12/23/whistling-orangutan-may-hint-at-language-evolution/ Whistling orangutans]
<center>{{#ev:youtube|CxK20wvjDLM}}</center>
*[http://books.google.de/books?id=MIx8D61JlboC&pg=PA23&hl=en&vq=%22of+a+preconceived+idea,+no+matter+if+the+idea+be+not+very+clear+nor+very+well+defined.+As+for+noting%22&source=gbs_quotes_r&cad=1_0 Quote] by Claude Bernard:
<blockquote>
<p style="margin-left: 2%; margin-right: 6%; font-size: 1.0em; font-family: Trebuchet MS;">
"It is impossible to devise an experiment without a preconceived idea; devising an experiment, we said, is putting a question ; we never conceive a question without an idea which invites an answer. I consider it, therefore, an absolute principle that experiments must always be devised in view of a preconceived idea, no matter if the idea be not very clear nor very well defined."</p>
</blockquote>
*[http://biosearch.berkeley.edu/index.php?q=%22cortical+folding%22&submit=Search&view=abstract&sortedby=rel&action=submit_search Open Access image search for "cortical folding"]
*[http://www.reuters.com/article/lifestyleMolt/idUSTRE49M6BL20081023 Report about a transplanted cornea being in use for a record total of 123 years]
*Youtube videos about CZ (some of them were found [http://technorati.com/tag/citizendium here]):
<center>{{#ev:youtube|SPtMMPE1IDQ}}</center>
<center>{{#ev:youtube|xhzXWX-WASg}}</center>
<center>{{#ev:youtube|XZKyXpqHmDc}}</center>
<center>{{#ev:youtube|CU2vl0RlMxw}}</center>
<center>{{#ev:youtube|zPfrGrpkA8M}}</center>
<center>{{#ev:youtube|vrh99kKfUkw}}</center>
:See also the [http://www.youtube.com/results?search_query=citizendium CZ tag at YouTube]
*A short video documentary about the Science Busters, an Austrian science comedy (in German):
<center>{{#ev:youtube|aNitjcZ0D1k}}</center>
*[http://mekentosj.com/papers/ Papers] - management of paper pdfs for the Mac
*[http://pimm.wordpress.com/2007/09/25/googles-palimpsest-project-promiscuous-distribution-of-all-science-data-sets/ Google’s Palimpsest project: promiscuous distribution of all science data sets]
*[http://www.wikigenes.org/ Wikigenes] - a wiki with one-click authorship determination and the possibility to rate individual contributions; possibly highly suited for scholarly contexts
* A video on defense strategies against [[worm (computer)|computer worms]] (in German)
<center>{{#ev:youtube|6Sm2-klwTUs}}</center>
*[http://www.denniskunkel.com/ Science Images by Dennis Kunkel], part of a [http://www.zeit.de/online/2008/39/bg-viz?8 series]. See also [http://www.wehi.edu.au/wehi-tv/others/index.html here]
*Science visualization games: [http://www.spongelab.com/ Spongelab], [http://www.invivo.ca/ In vivo communications], [http://www.vivetechnologies.com/ vive technologies]
*[http://www.newsweek.com/id/130625?tid=relatedcl Newsweek article "10 Fixes For the Planet"]
**[http://www.zerowaste.org/ ZeroWaste.org]
**[http://climatecounts.org/ ClimateCounts.org]
*[http://openlibrary.org/ Open Library]
*[http://pipes.yahoo.com/pipes/ Yahoo Pipes] - tool for web content parsing and analysis
*[http://www.spore.com/ftl Spore] - a game said to allow playing evolution; have not tested it, though
*[http://www.dw-world.de/dw/0,,3072,00.html?maca=en-podcast_living-planet-948-xml-mrss Podcast on environmental issues]
*[http://www.shashmakom.com/ Shash maqom on the web]
*[http://cosl.usu.edu/events/opened2008/program/ Open Education 2008: Celebrating Ten Years of Open Content] at the Center for Open and Sustainable Learning
*[http://www.wikieducator.org/OER_Handbook/educator/General_repositories Open Educational Repositories] - includes text, images, video and audio
*[http://www.pbs.org/kcet/wiredscience/video/193-virtual_paleontology.html Video "Virtual Paleontology" at Wired Science]
*[http://opengeodb.de/ Geological and geographical database]
*[http://edutechwiki.unige.ch/en/Main_Page EduTech Wiki]
*[http://www.ictmusic.org/ International Council for Traditional Music]
*[http://www.squidoo.com/ Squidoo]
*[http://www.affs.org/ Academy For Future Science]
*[http://www.cuil.com/ cuil - a new web search engine]
*[http://www.abc.net.au/science/k2/moments/s364725.htm Biography of Joseph Pujol, Le Pétomane]
*[http://www.dielmann-verlag.de/investments/frame_autoren/investments_autoren.htm Science novels]
*[http://www.nasaimages.org/ NASA image collections]
*[http://stats.grok.se/ WP article view stats]
*[http://nprc.incf.org/ Neuroscience Peer Review Consortium] - sharing referee reports across journals
*[http://www.teachers.tv/ Teachers TV - more educational videos]
*[http://www.withouthotair.com/ Book: Sustainable Energy - Without the Hot Air]
*[http://www.filmplattform.de/ Filmplattform] - video database
*[http://www.sonomawireworks.com/T4/ RiffWorks T4] - collaborative music editing tool
*[http://utopia.cs.manchester.ac.uk/ambrosia Ambrosia] - molecular visualization tool
*[http://whatismusic.info/download.html Philip Dorrell's book "What is Music?"]
*[http://www.morguefile.com/ free images online via morguefile]
*[http://en.wikiversity.org/wiki/Wikiversity:Publishing_original_research#List_of_wiki_journals List of wiki journals]
*[http://en.wikiversity.org/wiki/Portal:Wiki_Scholar Wiki Scholar]
*[http://www.infed.org/ infed website on informal education]
*[http://www.catb.org/~esr/writings/cathedral-bazaar/cathedral-bazaar/ The Cathedral and the Bazaar]
*[http://www.conferencealerts.com/ conference alerts]
*[http://www.wikicfp.com/ call for paper collection wiki]
*[http://www.mydrive.ch/ MyDrive - free online document sharing]
*[http://www.brainiac.magnify.net/ Brainy Acts - neuroscience video collection]
*[http://research.microsoft.com/%7Ecathymar/ Cathy Marshall's page on digital archiving]
*D. Taraborelli (2008), [http://nitens.org/docs/spr_coop08.pdf Soft peer review. Social software and distributed scientific evaluation, Proceedings of the 8th International Conference on the Design of Cooperative Systems (COOP 08), Carry-Le-Rouet, France, May 20-23, 2008]
*support for new active learning environments by [http://www.hhmi.org/news/college20080422.html Howard Hughes] and the [http://www.lifescied.org/cgi/content/full/3/4/215 National Academy]
*[http://examples.anotherwebcom.com/wikis/MediaWiki/Category:Offline_MediaWiki_Text_Editor Offline MediaWiki Text Editor]
**[http://forum.citizendium.org/index.php/topic,507.msg6452.html#msg6452 related forum post]
 
==Workgroups==
{{Workgroup|group= Biology}}
{{Workgroup|group= Physics}}
{{Workgroup|group= Psychology}}
 
== Interesting research papers ==
*[http://www.springerlink.com/content/515wg76276q18115/ Endocrine disruptors in bottled mineral water: total estrogenic burden and migration from plastic bottles]
*[http://www.nature.com/nature/journal/v457/n7232/abs/nature07752.html Travelling-wave nuclear magnetic resonance]
*{{citation
| last1 = Ryan | first1 = M.J.
| last2 = Brenowitz | first2 = E.A.
| year = 1985
| title = The Role of Body Size, Phylogeny, and Ambient Noise in the Evolution of Bird Song
| journal = American Naturalist
| volume = 126
| issue = 1
| pages = 87
| doi = 10.1086/284398
}}
*{{citation
| last = Bard | first =  J.B.
| year = 2005
| title = Anatomics: the intersection of anatomy and bioinformatics
| journal = J Anat
| volume = 206
| issue = 1
| pages = 1–16
| doi = 10.1111/j.0021-8782.2005.00376.x
| url = http://www.ncbi.nlm.nih.gov/pubmed/15679867
}}
*{{citation
| last = Bard | first =  J.
| year = 2007
| title = Systems developmental biology: the use of ontologies in annotating models and in identifying gene function within and across species.
| journal = Mammalian Genome
| volume = 18
| issue = 6
| pages = 402–411
| doi = 10.1007/s00335-007-9027-3
| url = http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1998887
}}
*{{citation
| last1 = Doering | first1 = J.E.
| last2 = Kane | first2 = K.
| last3 = Hsiao | first3 = Y.C.
| last4 = Yao | first4 = C.
| last5 = Shi | first5 = B.
| last6 = Slowik | first6 = A.D.
| last7 = Dhagat | first7 = B.
| last8 = Scott | first8 = D.D.
| last9 = Ault | first9 = J.G.
| last10 = Page-mccaw | first10 = P.S.
| last11 = Others
| year = 2008
| title = Species differences in the expression of Ahi1, a protein implicated in the neurodevelopmental disorder Joubert syndrome, with preferential accumulation to stigmoid bodies
| journal = The Journal of Comparative Neurology
| volume = 511
| issue = 2
| pages = 238–256
| doi = 10.1002/cne.21824
| url = http://www3.interscience.wiley.com/journal/121402700/abstract
}}
*{{citation
| last1 = Valente | first1 = E.M.
| last2 = Brancati | first2 = F.
| last3 = Dallapiccola | first3 = B.
| year = 2008
| title = Genotypes and phenotypes of Joubert syndrome and related disorders
| journal = European Journal of Medical Genetics
| volume = 51
| issue = 1
| pages = 1–23
| doi = 10.1016/j.ejmg.2007.11.003
| url = http://linkinghub.elsevier.com/retrieve/pii/S176972120700119X
}}
*{{CZ:Ref:Aizenberg 2005 Skeleton of Euplectella sp.: Structural Hierarchy from the Nanoscale to the Macroscale}}
*{{:CZ:Ref:DOI:10.1371/journal.pcbi.1000247}}
*{{:CZ:Ref:DOI:10.1038/msb.2008.39}}
*[http://dx.doi.org/10.1038/4551181a Economics needs a scientific revolution]
*[http://www.sciencemag.org/cgi/content/abstract/sci;320/5880/1191 "Mind reading"]
*[http://www.liebertonline.com/doi/abs/10.1089/ast.2006.0034 Biomineralization organic fossils]
*[http://www.sciencemag.org/cgi/content/full/320/5882/1464 cryptobiosis semi-fossil date seed germination]
*[http://www.sciencemag.org/cgi/content/full/320/5881/1355 Face processing area macaque brain]
*[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0002365 Foreign language acquisition in honey bees] (OA)
*[http://www.nature.com/news/2008/080523/full/news.2008.852.html Formants and size perception]
*[http://pediatrics.aappublications.org/cgi/content/short/121/6/e1510 Gender differences in breast feeding]
*[http://www.newscientist.com/channel/health/mg19826594.200-hay-fever-vaccine-needs-just-four-shots.html Hay fever vaccination]
*[http://www.wissenschaft.de/wissenschaft/news/292117.html inborn fear system infant emotion] (OA)
*[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0001679 Jazz music improvisation fMRI] (OA)
*[http://www.wissenschaft.de/wissenschaft/news/292054.html Mammoth genetics Siberia]
*[http://www.nature.com/news/2008/080604/full/453708a.html Movie blockbuster prediction; popularity; social interaction]
*[http://www.springerlink.com/content/n16g1754u1071x9x seal navigation star]
*[http://www.sciencemag.org/cgi/content/abstract/1155577 Serotonin hunger aggression]
*[http://www.blackwell-synergy.com/doi/abs/10.1111/j.1475-6811.2008.00197.x star cult; popularity; media; social interaction; personality]
*[http://www.antiquity.ac.uk/ant/082/ant0820290.htm Talheim massacre ancient genetics]
*{{cite journal
| author = Braun, A.R.
| coauthors = McArdle, J.; Jones, J.; Nechaev, V.; Zalewski, C.; Brewer, C.; Drayna, D.
| year = 2008
| title = Tune Deafness: Processing Melodic Errors Outside of Conscious Awareness as Reflected by Components of the Auditory ERP
| journal = PLoS ONE
| volume = 3
| issue = 6
| doi = 10.1371/journal.pone.0002349
}}
*[http://www.nature.com/nature/journal/v453/n7195/abs/nature06966.html Vivipary evolution]
*[http://dx.doi.org/10.1016/j.anbehav.2008.02.013 whale song; acoustic tracking; humpback whale; Megaptera novaeangliae; sexual selection; social interaction]
*{{cite journal
| author = Sylvester, A.D.
| coauthors = Christensen, A.M.; Kramer, P.A.
| year = 2006
| title = Factors influencing osteological changes in the hands and fingers of rock climbers.
| journal = Journal of Anatomy
| volume = 209
| issue = 5
| pages = 597
| url = http://pt.wkhealth.com/pt/re/jana/abstract.00004539-200611000-00003.htm
| accessdate = 2008-06-18
}}
*{{cite journal
| author = Granot, Y.
| coauthors = Ivorra, A.; Rubinsky, B.
| year = 2008
| title = A New Concept for Medical Imaging Centered on Cellular Phone Technology
| journal = PLoS ONE
| volume = 3
| issue = 4
| doi = 10.1371/journal.pone.0002075
}}
*{{cite journal
| author = Meyerowitz, E.M.
| year = 2002
| title = Plants Compared to Animals: The Broadest Comparative Study of Development
| journal = Science
| volume = 295
| issue = 5559
| pages = 1482-1485
| doi = 10.1126/science.1066609
}}
*{{cite journal
| author = Jones, D.K.
| year = 2004
| title = The effect of gradient sampling schemes on measures derived from diffusion tensor MRI: A Monte Carlo study
| journal = Magnetic Resonance in Medicine
| volume = 51
| issue = 4
| pages = 807-815
| doi = 10.1002/mrm.20033
}}
*{{cite journal
| author = Tuch, D.S.
| year = 2004
| title = Q-ball imaging.
| journal = Magn Reson Med
| volume = 52
| issue = 6
| pages = 1358-72
| doi = 10.1002/mrm.20279
}}
*{{cite journal
| author = Wedeen, V.J.
| coauthors = Wang, R.P.; Schmahmann, J.D.; Benner, T.; Tseng, W.Y.I.; Dai, G.; Pandya, D.N.; Hagmann, P.; D'arceuil, H.; De Crespigny, A.J.
| year = 2008
| title = Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers
| journal = Neuroimage
| doi = 10.1016/j.neuroimage.2008.03.036
}}
*complementary to deep homology: {{cite journal
| author = Insel, T.R.
| year = 2006
| title = From species differences to individual differences
| journal = Molecular psychiatry
| volume = 11
| issue = 5
| pages = 424
| doi = 10.1038/sj.mp.4001826
| note = complementary to deep homology
}}
*[http://dx.doi.org/10.1126/science.1156120 Tuned Responses of Astrocytes and Their Influence on Hemodynamic Signals in the Visual Cortex]
*{{cite journal
| author = Rilling, J.K.
| coauthors = Glasser, M.F.; Preuss, T.M.; Ma, X.; Zhao, T.; Hu, X.; Behrens, T.E.
| year = 2008
| title = The evolution of the arcuate fasciculus revealed with comparative DTI.
| journal = Nat Neurosci
| doi = 10.1038/nn2072
}}
*{{cite journal
| author = Su, M.Y.
| coauthors = Tapp, P.D.; Vu, L.; Chen, Y.F.; Chu, Y.; Muggenburg, B.; Chiou, J.Y.; Chen, C.; Wang, J.; Bracco, C.; Head, E.
| year = 2005
| title = A longitudinal study of brain morphometrics using serial magnetic resonance imaging analysis in a canine model of aging
| journal = Progress in Neuropsychopharmacology & Biological Psychiatry
| volume = 29
| issue = 3
| pages = 389-397
| doi = 10.1016/j.pnpbp.2004.12.005
}}
*[http://www.diss.fu-berlin.de/diss/receive/FUDISS_thesis_000000002638 Aerófonos mexicas de las ofrendas del Recinto Sagrado de Tenochtitlan]
*[http://dx.doi.org/10.1016/j.jtbi.2008.07.011 “X-ray vision” and the evolution of forward-facing eyes]
 
===[[Flow (psychology)|Flow]]===
*{{cite journal
| author = Dietrich, A.
| year = 2004
| title = Neurocognitive mechanisms underlying the experience of flow
| journal = Consciousness and Cognition
| volume = 13
| issue = 4
| pages = 746-761
| doi = 10.1016/j.concog.2004.07.002
}}
*{{cite journal
| author = Lee, E.
| year = 2005
| title = The Relationship of Motivation and Flow Experience to Academic Procrastination in University Students
| journal = The Journal of Genetic Psychology
| volume = 166
| issue = 1
| pages = 5-15
| url = http://heldref-publications.metapress.com/index/P24P88Q5R5344824.pdf
}}
*{{cite journal
| author = Rodríguez-sánchez, A.M.
| coauthors = Schaufeli, W.B.; Salanova, M.; Cifre, E.
| year = 2008
| title = Flow experience among information and communication technology users.
| journal = Psychol Rep
| volume = 102
| issue = 1
| pages = 29-39
| url = http://www.ncbi.nlm.nih.gov/pubmed/18481661
}}
*{{cite journal
| author = Decety, J.
| coauthors = Jackson, P.L.; Sommerville, J.A.; Chaminade, T.; Meltzoff, A.N.
| year = 2004
| title = The neural bases of cooperation and competition: an fMRI investigation
| journal = Neuroimage
| volume = 23
| issue = 2
| pages = 744-751
| doi = 10.1016/j.neuroimage.2004.05.025
}}
*{{cite journal
| author = Zhai, J.
| coauthors = Barreto, A.B.; Chin, C.; Li, C.
| year = 2005
| title = User stress detection in human-computer interactions.
| journal = Biomed Sci Instrum
| volume = 41
| pages = 277-82
| url = http://www.ncbi.nlm.nih.gov/pubmed/15850118
}}
*{{cite journal
| author = Johnstone, T.
| coauthors = Van Reekum, C.M.; Hird, K.; Kirsner, K.; Scherer, K.R.
| year = 2005
| title = Affective Speech Elicited With a Computer Game.
| journal = Emotion
| volume = 5
| issue = 4
| pages = 513-518
| url = http://content.apa.org/journals/emo/5/4/513
}}
*{{cite journal
| author = Picard, R.W.
| year = 2003
| title = Affective computing: challenges
| journal = International Journal of Human-Computer Studies
| volume = 59
| issue = 1-2
| pages = 55-64
| doi = 10.1016/S1071-5819(03)00052-1
}}
 
==Get current source==
 
''I sometimes take a CZ article ''home'' to work on it offline. Candidates for this are'':
 
{{rpl|Brain development}}
{{rpl|Brain evolution}}
{{rpl|Brain morphometry}}
{{rpl|Gyrification}}
{{rpl|Schizophrenia}}
{{rpl|Spherical harmonics}}
{{rpl|Magnetic Resonance Imaging}}
{{rpl|NMR spectroscopy}}
 
==Orphaned subpages==
{{rpl|Self-replication}}
{{rpl|Skeleton}}
*{{:CZ:Ref:DOI:10.1002/jmor.1083}}
{{rpl|Genome}}
*{{:CZ:Ref:DOI:10.1016/j.cub.2007.04.023}}
{{rpl|Environment (biology)}}
{{rpl|Cerebellum}}
{{rpl|Computational_biology}}
*Talk by Gary Bader on "Current Issues in Computational Biology and Bioinformatics"
<center>{{#ev:youtube|bVhOntMCmnQ}}</center>
{{rpl|Single-nucleotide_polymorphism}}
{{rpl|Whistling}}
*{{:CZ:Ref:DOI:10.1007/s10329-008-0117-y}}
{{rpl|Transcranial_magnetic_stimulation}}
*{{CZ:Ref:Hallett 2007 Transcranial Magnetic Stimulation: A Primer}}
 
==Offline notes==
 
*Move this to Topics??
 
''This section contains notes made about (or passages copied from, often with considerable losses in formatting, particularly concerning equations and special characters) books or papers I read offline. I plan to incorporate these points, as time permits, into current or future CZ articles. In practice, this probably won't happen in areas too far off my core topics (see above) but if you are knowledgeable about any of these subjects, I would appreciate if you would provide additional information, references or comments, be it via the corresponding CZ article (which, if it exists, should provide some useful context), this page or email.''
 
 
 
==={{pl|Biomechanics}}===
 
Gordon_2006_Mechanics_in_embryogenesis_and_embryonics_prime_mover_or_epiphenomenon.pdf
 
 
 
==={{pl|Brain development}}===
 
add barcroft 1942
 
and Johnson 2005 Processes of change in brain and cognitive development.pdf
 
 
 
Faulkner 2007 Axon Pruning in the Developing Vertebrate Hippocampus
 
 
 
Keller_2006_Resolving the paradox of common harmful heritable mental disorders
 
 
 
add mattick 2008
 
 
 
O'Leary 2007
 
COUP-TFI, Emx2, Pax6, and Sp8,
 
 
 
Rebsam 2008/ Sugiyama 2008
 
Otx2
 
 
 
Levitt, P. (2003) Structural and functional maturation of the developing primate brain. J. Pediatr., 143 (Suppl. 4), S35–S45.
 
 
 
Agarwala, S., Sanders, T.A. and Ragsdale, C.W. (2001) Sonic hedgehog control of size and shape in midbrain pattern formation. Science, 291, 2147–2150.
 
 
 
add Meyer 2000 Embryonic and Early Fetal Development of the Human Neocortex
 
 
 
==={{pl|Brain evolution}}===
 
Keller_2006_Resolving the paradox of common harmful heritable mental disorders
 
 
 
Farris SM (2008) Evolutionary convergence of higher brain centers spanning the protostome-deuterostome boundary. Brain Behav Evol 72:106–122.
 
--> get it!
 
Levitt, P. (2003) Structural and functional maturation of the developing primate brain. J. Pediatr., 143 (Suppl. 4), S35–S45.
 
==={{pl|Brain function}}===
 
*{{cite journal
| author = Thaut, M.H.
| coauthors = Demartin, M.; Sanes, J.N.
| year = 2008
| title = Brain Networks for Integrative Rhythm Formation
| journal = PLoS ONE
| volume = 3
| issue = 5
| doi = 10.1371/journal.pone.0002312
}}
*{{cite journal
| author = Stevens, L.T.
| year = 1886
| title = On the time sense
| journal = Mind
| volume = 11
| issue = 43
| pages = 393-404
| url = http://links.jstor.org/sici?sici=0026-4423(188607)1%3A11%3A43%3C393%3AOTT%3E2.0.CO%3B2-7
}}
 
==={{pl|Brain morphometry}}===
 
Burish_2004_brain_morphology_social_complexity_birds.pdf
 
cytoarchitectonic areas
 
Lefebvre 2008:
 
"Unfortunately, brain imaging studies are usually conducted on single species and almost never compare animals that show lifestyle differences likely to affect cognition. A remarkable exception is the work of Goodson and co-authors on the neural basis of avian sociality. The work from this group uses state-of-the-art neuroscience techniques to, among other things, map the receptor density
 
of neuropeptides involved in sociality; the sample of species is remarkably broad for this kind of study (five), and the authors distinguish cases of independent and phylogenetically-correlated evolution. The studies identify neurohormone receptor site differences that correlate with sociality differences in 13 different brain centers ranging from the sub-pallial septum to the stria terminalis,
 
the hypothalamus and the hippocampus [see table 1 in Goodson et al., 2006]."
 
and
 
"It would be interesting if Goodson’s comparative research program on sociality and fine level neuronal measures could address the assumptions of brain size research, for example by looking at the relationship between neuropeptide receptor density and size of structures involved in sociality such as the amygdala, the septal complex, the hypothalamus and the hippocampus."
 
Goodson JL, Evans AK, Wang Y (2006) Neuropeptide binding reflects convergent and divergent evolution in species-typical group sizes. Horm Behav 50: 223–236.
 
tensor-based morphometry in schizophrenia: Gogtay 2008
--> how are their deformation fields computed?
 
cross 2008 Age-related decrease in axonal transport measured
 
van Haren 2008 Genes and structural brain imaging in schizophrenia
 
"There is sufficient evidence to defend the use of structural neuroimaging as an endophenotype to investigate a complex phenotype such as schizophrenia despite the
 
notion that, so far, no single causal pathway emerges from these studies."
 
on microscopy in general: e.g. liem 2008 in farmer 2008: motoneuron GFP
 
2005_Corruccini_1987_comparative_morphology_evolution_allometry.pdf
 
*Andreasen, N. C., Arndt, S., Swayze, V., 2nd, Cizadlo, T., Flaum, M., O'Leary, D., Ehrhardt, J. C., and Yuh, W. T. 1994. Thalamic abnormalities in schizophrenia visualized through magnetic resonance image averaging. Science 266: 294–298.
:one of the earliest studies using VBM
 
*Chung, M.K., Worsley, K.J., Paus, T., Cherif, C., et al., 2001. A unified statistical approach to deformation-based morphometry. NeuroImage 14(3), 595–606.
 
*Johnson, G.A., Cofer, G.P., Fubrara, B., Gewalt, S.L., Hedlund, L.W., Maronpot, R.R., 2002. Magnetic resonance histology for morphologic phenotyping. J. Magn. Reson. Imaging 16, 423–429.
:check for neuroimaging in there
 
*Ashburner, J., Hutton, C., Frackowiak, R., Johnsrude, I., Price, C., Friston, K., 1998. Identifying global anatomical differences:  deformation-based morphometry. Hum. Brain Mapp. 6, 348–357.
 
==={{pl|Brain plasticity}}===
 
Smirnakis, S. M., Brewer, A. A., Schmid, M. C., Tolias, A. S., Schuz, A., Augath, M., et al. (2005). Lack of
 
long-term cortical reorganization after macaque retinal lesions. Nature, 435(7040), 300–307.
 
:Reports on limits to brain plasticity.
 
 
 
See also Ramus 2006: "Ironically, plasticity is among the properties of the brain that must be under
 
the tightest genetic control. Indeed, the molecular mechanisms that modulate
 
neurons’ response to activity and changes thereof are precisely the sort of
 
processes that genes trigger and regulate."
 
 
 
 
 
Seri 2001: Astrocytes give rise to neurons in the adult mammalian hippocampus
 
 
 
Rebsam 2008: Otx2’s Incredible Journey
 
-"visual experience triggers cellto-
 
cell transfer of the homeoprotein Otx2 to cortical interneurons, where it promotes maturation of
 
inhibitory neural circuitry and opens the critical period for plasticity in the visual cortex"
 
 
 
==={{pl|Brain size}}===
 
check p. 781 in Götz 2005 in ASPM and microcephaly
 
 
 
Byrne 2007:
 
"In
 
a natural experiment, the cranial fossils of a Majorcan
 
bovid showed a striking drop in brain size after its
 
only mammalian predator died out (Figure 3) [50]."
 
Köhler, M., and Moya-Sola, S. (2004). Reduction of brain and sense organs in the fossil insular bovid Myotragus. Brain Behav. Evol. 63, 125–140.
 
 
 
 
 
==={{pl|Cleavage plane orientation}}===
 
''Here, I have unpublished data (obtained together with Jörg Jakobi and Hans-Peter Richter) on the effect of magnetic field strength on third cleavage orientation in Xenopus laevis, contradicting earlier studies by Valles et al. (2002). If you are interested in details, just drop me a line.''
 
Götz 2005 the cell biology of neurogenesis
 
:cites Chenn 1995 on cleavage orientation and asymmetric cell division
 
:see also Huttner 1997
 
 
 
==={{pl|Comparative method}}===
 
Sherry. NEUROECOLOGY. Annu. Rev. Psychol. 2006. 57:167–97
 
Rehkämper 1991
 
 
 
Lefebvre 2008:
 
"Unfortunately, brain imaging studies are usually conducted on single species and almost never compare animals that show lifestyle differences likely to affect cognition. A remarkable exception is the work of Goodson and co-authors on the neural basis of avian sociality. The work from this group uses state-of-the-art neuroscience techniques to, among other things, map the receptor density
 
of neuropeptides involved in sociality; the sample of species is remarkably broad for this kind of study (five), and the authors distinguish cases of independent and phylogenetically-correlated evolution. The studies identify neurohormone receptor site differences that correlate with sociality differences in 13 different brain centers ranging from the sub-pallial septum to the stria terminalis,
 
the hypothalamus and the hippocampus [see table 1 in Goodson et al., 2006]."
 
and
 
"It would be interesting if Goodson’s comparative research program on sociality and fine level neuronal measures could address the assumptions of brain size research, for example by looking at the relationship between neuropeptide receptor density and size of structures involved in sociality such as the amygdala, the septal complex, the hypothalamus and the hippocampus."
 
Goodson JL, Evans AK, Wang Y (2006) Neuropeptide binding reflects convergent and divergent evolution in species-typical group sizes. Horm Behav 50: 223–236.
 
 
 
==={{pl|Deep homology}}===
 
Elman, J. L., Bates, E. A., Johnson, M. H., KarmiloV-Smith, A., Parisi, D., & Plunkett, K. (1996). Rethinking
 
innateness: A connectionist perspective on development. Cambridge, MA: MIT Press.
 
 
 
King MC, Wilson AC (1975) Evolution at two levels in humans and chimpanzees. Science 188: 107–116.
 
cited by Carroll 2005
 
 
 
More from Carroll 2005:
 
"Thus, while the coding sequences of the structural and regulatory proteins are constrained by pleiotropy, modular cis-regulatory regions enable a great diversity of patterns to arise from alterations in regulatory circuits through the evolution of novel combinations of sites for regulatory proteins in cisregulatory elements [35]."
 
35. Gompel N, Prud’homme B, Wittkopp PJ, Kassner VA, Carroll SB (2005) Chance caught on the wing: Cis-regulatory evolution and the origin of pigment patterns in Drosophila. Nature 433: 481–487.
 
and
 
"A standard
 
comparative analysis of the FOXP2
 
coding sequences of humans and songlearning
 
and non-learning birds did
 
not reveal any amino acid substitutions
 
that were shared between song-learning
 
birds and humans, nor any fixed
 
differences between song-learning
 
and non-learning birds. The study
 
concluded there was “no evidence for
 
its [FOXP2] role during the evolution
 
of vocal learning in nonhuman
 
animals” [67].
 
In great contrast, when FOXP2
 
mRNA and protein expression in
 
the developing and adult brains of
 
a variety of song-learners and nonlearners
 
were examined, a striking
 
increase in FOXP2 expression was
 
observed in Area X, a center necessary
 
for vocal learning that is absent from
 
non-learners [68] (Figure 3A–3C).
 
This increase occurs in zebra finches
 
over the developmental period when
 
vocal learning occurs. Furthermore,
 
in adult canaries, seasonal changes
 
in FOXP2 expression were observed
 
in Area X, associated with changes in
 
the stability of the bird’s song (Figure
 
3D–3F). Thus, remarkable changes in
 
the regulation of FOXP2, but not the
 
protein sequence, are correlated with
 
the development and evolution of
 
vocal learning in birds. These changes
 
could arise through the evolution of
 
FOXP2 cis-regulatory sequences, or of
 
the regulatory or coding sequences
 
of transcription factors that control
 
FOXP2."
 
67. Webb DM, Zhang J (2005) FoxP2 in songlearning birds and vocal-learning mammals. J Hered 96: 1–5.
 
68. Haesler S, Wada K, Nshdejan A, Morrisey EE, Lints T, et al. (2004) FoxP2 expression in avian vocal learners and non-learners. J Neurosci 24: 3164–3175.
 
 
 
MANATEE gene annotation software [http://manatee.source forge.net/]
 
 
 
Rehkämper 1991
 
"Besides diversification, which obviously occurs, parallel evolution may be one of the general features of evolutionary development."
 
("The difference between parallelism and convergence is whether the two groups, which developed this similarity independently, originate from a common ancestor (parallelism) or not (convergence). However, both have responded to the same selective pressure or have followed the same adaptive trends. This we would like to call "parallel evolution ". It should be stressed that "parallel evolution" does not implicate a decision between convergence and parallelism.")
 
 
 
"brain structure in birds has been studied to test
 
the hypothesis that, if a considerable adaptive ability
 
is given, this should be correlated with an expansion
 
of multimodal integrative areas in the brain."
 
- also provides data on connectivity patterns in avian and mammalian brains:
 
"A comparison of the connectivity of the various areas
 
of the mammalian neocortex with that of the avian ventral
 
hyperstriatum/neostriatum complex reveals further
 
similarities, which can now be interpreted as a functional
 
similarity. The brain regions comprise primary target
 
areas of the three major sensory systems (visual, auditory
 
and somatosensory) in the mammalian as well as in the
 
avian telencephalon. A primary output area can be defined
 
in both classes. In both classes the primary areas
 
are surrounded by secondary areas, which are interconnected
 
with the respective primary areas, e.g. the primary
 
visual cortex in mammals is connected with a neighbouring
 
secondary area (Zilles 1985; Zilles and Wree 1985).
 
This corresponds to the ectostriatum in the pigeon with
 
a core and a belt region (Karten and Hodos 1970;
 
Ritchie 1979). The mammalian auditory cortex exhibits
 
a core (primary) and a belt (secondary) region (Patterson
 
977), which correspond to the primary area Ne 12 with
 
the secondary areas Ne 13 and 14 (Rehk/imper et al.
 
1985). Finally, the mammalian somatosensory cortex
 
follows the same scheme (Pandya and Yterian 1985).
 
The equivalent areas in birds are the primary area Ne 1
 
and the secondary area Ne 2 (Rehk/imper et al. 1985).
 
The most important aspect, however, is that not only
 
in the mammalian neocortex, but also in the avian neostriatum
 
and ventral hyperstriatum, a considerably large
 
region is occupied by tertiary areas."
 
 
 
Furthermore: "Deduced from a Darwinian theory of evolution with
 
the central argument of adaptation, it has been hypothesized
 
that parallel evolution in mammals and birds
 
should also be found in the brain of both classes. Mammalian
 
brain evolution is characterized by progressive
 
encephalization, e.g. in primates, which are a biologically
 
advantageous group. This progressive encephalization
 
is mainly a progressive telencephalization, especially
 
neocorticalization. Principally, the same is found in
 
birds. Architecture and connectivity of the quantitatively
 
most progressive brain parts support the hypothesis that
 
this progression is primarily an enlargement of
 
multimodal integrational capacities, both in mammals
 
and in birds. That points to a strongly adaptive character
 
of neocorticalization and a biological advantage of increased
 
integrational capacities. It can be concluded that
 
there is strong selective pressure, which acts in a similar
 
way in mammals and in birds and leads to parallel brain
 
evolution."
 
- nice historical overview, too
====Minelli====
From Minelli 2003: The Development of Animal Form
chap  10:Evo-devo perspectives on homology (p. 222-249)
p. 251 (summary):"homology is a relative, rather than an absolute concept."
 
*Buss 1987 The Evolution of Individuality
:developmental role for cilia; mitosis in metazoan cells is blocked once they have cilia
*{{citation
| last1 = Jacob | first1 = J.
| last2 = Hacker | first2 = A.
| last3 = Guthrie | first3 = S.
| year = 2001
| title = Mechanisms and molecules in motor neuron specification and axon pathfinding
| journal = BioEssays
| volume = 23
| issue = 7
| pages = 582–595
| doi = 10.1002/bies.1084
}}
*Arnone, Davidson 1997: The hardwiring of development: organization and function of genomic regulatory systems
*Arthur 2002: The emerging conceptual framework of evolutionary developmental biology
*Shubin, Wake 1996: Phylogeny, variation, and morphological integration
*Wolpert-L: several papers on "positional information"
:also (1994) "The evolutionary origin of development"
:and (1998) debatable issues
::what is conserved in evolution: the operation!
*Wake 1991: Homoplasy: The result of natural selection or evidence of design limitation?
:see also Wake 1999 in Homology ([http://www.novartisfound.org.uk/catalog/222abs.htm Novartis Foundation Symposium 222])
*Reeck 1987: Homology in proteins and nucleic acids
*Müller, Newman 1999 in Homology (Novartis Foundation Symposium 222)
*Raff 1998 cell number control and timing
*Egel 2000: how homology entered genetics
*Gubb 1998: cellular polarity ... growth ... information
*Hanken, Wake 1993: Miniaturization of body size
*Morata, Sanchez-Herrero 1999:Patterning mechanisms in the body trunk
:shows that (at least some) morphological boundaries coincide with boundaries in gene expression
*Abzhanov, Popadic, Kaufman 1999: chelicerate hox genes and the homology of arthropod segments
*Gilbert, Bolker 2001: homology of process
:scope of homology, with focus on genes
*Galis 1996:The evolution of insects and vertebrates: homeobox genes and homology
:2001:Why five fingers?
 
p. 231:"Consideration of the whole developmental pathway is required for a sensible assessment of homology. To take the whole developmental pathway into account, it is not enough to consider the expression patterns of more than one gene and the control cascades in which these genes are involved. it is necessary to study, in addition, the epigenetic properties of development (Müller and Newman, 1999), that is, the generic properties of molecules, cells and tissues, and the interaction dynamics among them."
*Greenspan 2001: The flexible genome
:posits that degeneracy, not redundancy, explains why some k.o. mice do not seem to have phenotypic effects
"An interesting difference between redundant systems and degenerate systems is that the former are likely to produce clearly identifiable homologues, whereas the latter are likely to be features with complex and perhaps contradictory homologous components."
*Newman and Müller 2000:Epigenetic mechanisms of character origination
:regard epigenetics as crucial for morphological innovations
 
p. 234:"Definitely, the single most important requirement, when addressing a problem of homology, is probably the identification of meaningful units to be compared. Until recently, virtually all assessments of homology involved morphological units, either in adults or earlier developmental stages. New perspectives were explored by the recent turn towards developmentally defined morphological units (e.g., Wagner 1989, Schwenk 2001) and processes (e.g., Butler and Saidel 2000, Gilbert and Bolker 2001)."
Wagner 1989: The biological homology concept
Butler, Saidel 2000: Defining sameness
 
*Israelsson 1999: New light on th enigmatic Xenoturbella (phylum unknown)
 
p. 234: "To describe any of those parts of the phenotype which behave as a relatively independent functionally integrated group of traits, Wagner introduced the concept of module (Wagner 1996, Wagner and Altenberg 1996). A module produces an integrated character complex and is thus both a developmental and an evolutionary unit."
 
Hernandorena and Marco 1991: heat-induced developmental uncoupling of mesoderm from ectoderm and endoderm germ layer derivatives
 
p. 237: "are the ectoderm, endoderm and (where present) mesoderm homologous throughout the animal kingdom? Are there animals with more than three germ layers?"
:Hall 1998b:germ layers and the germ-layer theory revisited
 
"In Drosophila, mitotic domain boundaries are cell fate boundaries (Cambridge et al., 1997)."
 
p. 238: "Nomenclature not withstanding, there is no clear-cut difference between the three traditional germ layers, the neural crest of the vertebrates, the imaginal discs of the holometabolous insects, and the set-aside cells from which the adult will develop in marine invertebrates (such as nemerteans and sea urchins)."
:Hall 1998b: set-aside layers = secondary germ layers
:but see Henry, Martindale 1998: Evolution of cleavage programs
"Brian Hall (...) has strongly argued in favour of treating the neural crest as a fourth germ layer. The neural crest has been defined as the quintessential feature of vertebrates (...), one of the main keys to their extraordinary adaptive success. In fact, the neural crest parallels. In fact, the neural crest parallels the mesoderm as a major source of internal structures, tissues and organs. Its peculiar 'strategy' is the targeted migratory behaviour of its multiple components."
 
p. 241:"A ''field'' is a group of cells provided with self-organising and self-regulating properties (Ingham and Martínez-Arias 1992).""...if a species can be defined in terms of a shared gene pool, a field can be diefeines in terms of shared gene expression. A morphogenetic field is possibly the lowest term in a whole hierarchy of systems in which evolutionary novelties may arise. This happens following quantitative and qualitative changes in one or more gene expression patterns (Gilbert et al., 1996)."
:Gilbert et al., 1996: Resynthesizing evolutionary and developmental biology
:see also progenitor field (Davidson 1993) and equivalence group (Horvitz and Sternberg 1991), gene expression territories and compartments
 
p. 252:"Animal evolution has explored many more solutions than the chicken, mouse, zebrafish, Drosophila, and Caenorhabditis would suggest. [...] Wide-ranging comparisons and a combined interdisciplinary approach are required before evolutionary biology may finally be written from 'first principles'."
 
==={{pl|Emotion}}===
 
From Ramus 2006:
 
"James Blair, reviewing extensive data from developmental psychopathy, upgrades
 
his former Violence Inhibition Model to the Integrated Emotions Systems. In so
 
doing, he provides extremely speciWc hypotheses (and a wealth of data) on how
 
genetic anomalies, aVecting a speciWc part of the emotion system, may alter its development
 
and lead to a relatively speciWc cognitive disorder. Although the genetics of
 
psychopathy remains to be researched, the neuro-cognitive part of the model is
 
remarkably well speciWed, so much so that it appears to be the first model of a specific
 
cognitive developmental disorder that is ready for full integration with biological
 
detail at the molecular level."
 
 
 
==={{pl|Encephalization}}===
 
Rehkämper 1991:
 
"Annelids, arthropods (especially insects)
 
and mollusks (especially octopods) are well known
 
to be highly encephalized (Bullock and Horridge 1965;
 
Young 1971; Maddock and Young 1987). A brain part
 
is found in all these groups that is organized in the same
 
way as the vertebrate integrational areas. In annelids,
 
it is their "midbrain" with the corpora pedunculata.
 
In insects and chelicerates, this part is the protocerebrum
 
(corpora pedunculata, protocerebral bridge, central
 
body), which is interconnected with all other brain parts.
 
It modulates indirectly the motor output. In octopods,
 
it is the vertical lobe that is organized as an integrational
 
centre. It has been proven that the vertical lobe is involved
 
in complex behaviour and learning (Wells 1978).
 
All these vertebrate and non-vertebrate groups are
 
highly encephalized and dominating elements in the recent
 
fauna. Thus, it can be assumed that the recent fauna
 
in general is strongly influenced by the biological advantage
 
of developing multimodal integrational capacities."
 
 
 
==={{pl|Epigenetics}}===
 
Arai 2009 Transgenerational Rescue of a Genetic Defect in Long-Term
 
Potentiation and Memory Formation by Juvenile Enrichment
 
==={{pl|Expertise}}===
Some notes on Larry Sanger's essay "The Fate of Expertise After Wikipedia" (Episteme 2009, ###add issue no. + online link###  ):
*Larry mentions that [[Wikipedia]] exists in over 200 languages but most if not all his remarks are made with respect to the English Wikipedia and not necessarily applicable to other language versions
 
*"The topic is well focused by this paradox: are [[expert]]s still needed when Wikipedia has succeeded, apparently, without them? I think they are; my aim in this paper is to reduce the sense of paradox."
:This reminds me of the [[plot (arts)|plot]] typical for [[Hollywood]] [[movie]]s: Create an artificial problem and spend the rest of the time solving it. Larry's paradox above rests entirely on the ambiguity of what the reader may understand under "without them". If Larry had used a more precise phrasing, the resolution of the paradox would probably have been very easily visible (and his article shorter). To put it in different words:
Are [[vitamine]]s still needed when [[mankind]] has succeeded, apparently, without them?
can be understood as, e.g.,
#Are vitamines still needed when mankind has succeeded, apparently, without ''being able to [[synthesis (biochemistry)|synthesize]]'' them?
or
#Are vitamines still needed when mankind has succeeded, apparently, without ''ingesting'' them?
The former "apparentness" appears to me to be clearly more "apparent" than the latter.
In the Wikipedia context, the vitamines would be pieces of [[knowledge]] (similar to what [[Google]] dubbed ''[[knol]]s'') which have to be "ingested" by the project, i.e. entered by some sort of experts, and collaboratively rephrased. Given the wide range of topics covered at Wikipedia, [[expertise]] will have to be understood in terms of these subjects (and [[gradient]]s in expertise - beyond "know-nothings" and "know-somethings", as Larry put it - should be kept in mind): Frequent watchers of some TV series may be regarded as experts in [[sitcom]]ology, while [[homeless]] people, should they be connected to the [[internet]] and edit Wikipedia, could certainly contribute expert knowledge on [[street life]] and related articles, whereas many who worked professionally on a topic (including having studied it academically) would probably meet the criteria of more traditional definitions of expertise.
 
The important thing is that most of the knowledge entered into Wikipedia (with the exception of the WP name space and thelike) is acquired outside Wikipedia, just like vitamines are being synthesized outside our bodies. Wikipedia and our bodies are thus [[open system]]s, permitting the exchange of information, matter (and heat) with their respective environments. Consequently, the fate of Wikipedia will certainly depend on the regular availability of expert attention (which is a scarce resource in many fields), rather independent of the precise internal rules.
 
*The article contains no figures (or equations, for that matter) but lots of footnotes (not even clickable), making it tedious for me to digest it (my field is [[neuroimaging]], and I have developed the habit to look at the figures and equations first before deciding whether to dive deeper into an article).
:Example:
:(p. 61) "Imagine a database of research in which new findings are not published in papers that are put into volumes, but appended in various places to a single, collaboratively-managed outline of knowledge."22
:(Footnotes section, p. 72) 22 I am far from being the only one to have suggested this, but I developed the idea at some length in my (2006a).
:(Reference section, p. 70) Sanger, Larry. 2006a. “Text and Collaboration: A PersonalManifesto for the Text Outline Project.” Posted April 2006. http://www.textop.org/TextAndCollaboration.html
 
*"In physics, for example, there is simply less to debate about than in, say, philosophy."
:I object to the "simply less":  The difference is not in the amount of things to debate about but in the way of debating - argumentation in physics ultimately boils down to replicable quantification - by measurement, calculation or a combination or (quantitative) critique thereof. This aspect of replicable quantification seems to be much less prominent in philosophy, leaving room for qualitative debates and thereby creating an illusion that there is more to debate in philosophy than elsewhere.
 
*Larry talks about "a vector toward continual improvement", "asymptotically approaching a perfect model of expert opinion" and states
"Over the long term, the quality of a given Wikipedia article will do a random walk around the highest level of quality permitted by the most persistent and aggressive people who follow an article."
:What about some quantitative model of the information contents in encyclopedic projects with the boundary conditions provided by the rules in place at Wikipedia, Citizendium or the Encyclopaedia Britannica?
 
*a little later:
"Since experts tend to be very busy professionals, they often cannot keep up their side of the edit war, and they lose by default."
:What about the proposal of just requiring editors (in the CZ sense, i.e. subject experts), not _all users_, to use real names, then? Well, experts are less likely to be willing to review anonymous contributions than those filed under a real name.
 
==={{pl|Gyrification}}===
 
micropolygyria (Toda 1999)
 
 
 
Duncan and Olson 1993:
 
"The shape index and the curvedness are two
 
properties derived from the principal curvatures that
 
are also useful.The shape index S is a generalized
 
measure of concavity and convexity defined by
 
(3)"
 
 
 
from lockwood 1999:
 
"Zilles et al. (1989) used a gyrification index to express degrees of convolution in surface area. Measured from cross sections, the index is the length of the complete contour of the surface area divided by the length of the outer contour alone. The expectation is that the gyrification index should increase with larger brain sizes, and Zilles et al. (1989) confirm that this is the case for
 
primates. However, what is most important about this study is the difference in regression lines between anthropoids and prosimians.
 
The slope is 0.66 for anthropoids and 0.23 for prosimians, ‘‘indicating that for every unit increase in brain size, anthropoids acquire a higher degree of cortical folding than do prosimians’’ (Zilles et al., 1989, p. 146).
 
 
 
This example highlights two important aspects of homoplasy. On the one hand, the underlying relationship between convolutions of the brain’s surface area and total brain size gives rise to potential homoplasy, as parallel increases or reductions in brain size will usually occur with shifts in sulcal development. Zilles et al. (1989) note, for example, that the similar degrees of gyrification in callitrichids and prosimians represents convergent evolution as a side effect of small brain size. This relationship would presumably affect the use of individual sulci as phylogenetic characters. Diagnostic sulci of a particular group will not be present in members with small brains, and if small brains are the primitive condition, this situation could be especially confusing. In the terminology used above in definitions of homoplasy, the relationship between surface convolutions and brain size represents a structural or functional constraint on brain organization that governs the phenotypic expression of surface morphology.
 
 
 
The second important point is that the relationship of gyrification and brain size is group specific."
 
 
 
from welker 1959:
 
"The second main hypothesis supported by the experiments reported here is that cortical sulci are formed at the boundaries of “physiological” subdivisions. Each of these physiological subdivisions (e.g., the cortical representations of the separate digits) presumably subtends discrete bundles of afferents (and their terminals) which are differentiated from one another not only spatially but by their synaptic connections to discrete and separate regions at the periphery. Since the evoked potentials are largest there, the crown of a gyrus apparently receives a dense bundle of afferents from a correspondingly richly innervated sensory surface (e.g., the
 
distal eminence of a digit). The region which forms the fundus of a sulcus, or incipient suleus, on the other hand, presumably receives relatively sparse innervation from the periphery (e.g., digit dorsum or proximal portion of a digit) since the evoked responses there are minimal or nonexistent. Brain sections stained with licmatoxylin indicate that there is a greater density of myeliriated fibers at the gyral crowns than at the fundi in the somatic region of the raccoon. At any rate, these data suggest that the cortex of the gyral crowns is functionally more active than that of the fundi.
 
 
 
To extend the hypothesis, it would seem that during ontogenetic development of the cerebral cortex tlie cortical terminals from densely innervated regions push upward and outward, while sparsely innervated areas are left behind to become the fundi. The dynamics of sulcus formation, then would more likely be conceived of as a mushrooming, rather than as an infolding of cortex. Whether or not sulci in other regions of the cerebral cortex or in the cortex in other animals bear the same relationships to physiological or anatomical subdivisions as they do in SI of the raccoon remains to be demonstrated in detail. Rome evidence (Connolly, '50) indicates
 
that such a correlation is often found in primate brains. The mechanism which might regulate such selective gi+owth of corticopetal connections may involve biochemical factors as suggested by Sperry (51). That the particular shape of cortical sulci may be influenced by limitations imposed on growth by the skull has been suggested by Clark ( '45).
 
 
 
Individual differences in directional orientation and topographic location of sulci is a common finding among animals of a given species. Factors which produce such variability in tlie growth of individual brains are unknown at present but our data indicate that despite such Variability, the sulci faithfully separate physiologically distinct subdivisions."
 
 
 
from Campbell 2002:
 
"Radial glial cells create boundaries in the developing brain to limit neuronal migration [46-48]."
 
 
 
Fukunishi 2006 Development of cerebral sulci and gyri in fetuses of cynomolgus monkeys
 
Kashima 2008 Development of cerebral sulci and gyri in fetuses of cynomolgus monkeys (Macaca fascicularis). II. Gross observation of the medial surface
 
 
 
==={{pl|Heritability}}===
 
Keller_2006_Resolving the paradox of common harmful heritable mental disorders:
 
"finding positive heritability for a mental disorder does not vindicate the mental disorder as a diagnostic category. To a first approximation, every reliably measured behavioral trait shows positive heritability – even constructs such as television viewing
 
(Plomin et al. 1990) and political attitudes (Eaves et al. 1999). Any arbitrary “disorder” composed of unrelated but heritable symptoms will show credible heritability. Last, heritability is a statistical construct that averages over a lot of complexity. The causal pathways between genes and the heritable behaviors they influence must be mediated by many factors, both genetic and environmental
 
in nature. If these factors differ across populations, cohorts, or environmental conditions, then heritability estimates – and even the specific genes responsible for the heritability – might also differ across populations, cohorts, or environmental conditions."
 
 
 
==={{pl|Human uniqueness}}===
 
Vallender 2008b
 
"A Footnote on Anthropocentrism
 
In the course of these studies, it becomes inevitable
 
that there is talk of anthropocentrism. Several factors
 
should be made clear: First, there is no scientific reason
 
to think that the lineage leading to humans is privileged
 
or otherwise different from the lineages leading to other
 
species. It might be the case that the mechanisms driving
 
the emergence of the human phenotype vary somewhat
 
from other species, but this is probably not true and no
 
evidence has been presented indicating that this is the
 
case. Second, that positive selection was at work on the
 
human brain should not come as a surprise or otherwise
 
set it apart from other phenotypes. Indeed, we are interested
 
in the brain because, as humans, it is such a major
 
part of who we are. Behaviors, psychiatric disorders,
 
emotions, language, all of these intrigue us and warrant
 
the study of the brain. Other traits unique to humans,
 
such as the changes in body hair and sweat glands related
 
to a novel thermoregulatory strategy, are equally important
 
and warrant study. Finally, the same studies can, and
 
likely will, be done for any species. We can legitimately
 
ask what makes a mouse so ‘mousy’ or a cat so ‘catty.’ The
 
methodologies will be largely similar and we will expect
 
to see the same sorts of results. That these studies generally
 
take a back seat in visibility to those in humans does
 
not reflect on the science itself, but rather on the priorities
 
of our human society."
 
 
 
==={{pl|Image segmentation}}===
 
Khairy 2007:
 
"marching cubes algorithm (Lorensen and Cline,
 
1987)."
 
"The polygonalization of the RBF is performed using a
 
marching tetrahedra variant that has been optimized for
 
surface following (Treece et al., 1999)."
 
Crum_2003_Zen_and_the_art_of_medical_image_registration_correspondence_homology_and_quality.pdf




== Bot request - jogging [[:Category:Pages with too many expensive parser function calls]] ==


==={{pl|Larynx}}===
Daniel, please could you see my post on the forums at [http://forum.citizendium.org/index.php/topic,3209.msg30024.html#msg30024 this link]. My experience in programming Bots is precisely zero, so I could use the opinion (and perhaps programming skills if you have the time) of someone with an interest in this area. --[[User:Chris Key|Chris Key]] 17:12, 4 June 2010 (UTC)


Jeffery 2003 Brain expansion and comparative prenatal ontogeny of the non-hominoid primate cranial base:
:I think
:;<code><nowiki>python add_text.py -cat:Pages_with_too_many_expensive_parser_function_calls -text:" " -summary:"Test edit:Category jog for [[:Category:Pages with too many expensive parser function calls]]."</nowiki></code>
:will add a space at the end of each page in that category and should do the trick. 


"The similarities in the direction of angulation suggests that perhaps the same factor is influencing the cranial base in the macaques, howler monkeys, and modern humans. Of the many possible factors, the most obvious from the hrMR images is the size of the upper airway, particularly the larynx. Sagittal images show that even at the earliest stages of fetal life, the larynx in Alouatta is much larger than that in the fetal macaque, which in turn is larger than that in the human fetus (Fig. 9). These size differences seem to match differences in CBA, indicating that the two could well be correlated (see Schon, 1976; Laitman et al., 1977, 1978, 1979; Laitman and Reidenberg, 1993). Clearly, a study of the potential influence of upper airway growth on the fetal basicranium is warranted."
:Can't test this right now, as I am [http://dx.doi.org/10.1038/npre.2010.4511.2 traveling], but getting the permission to run this script will take time anyway &mdash; can you arrange for that? Will try to do the test edits when I get a stable internet connection, but this won't be before tomorrow night. --[[User:Daniel Mietchen|Daniel Mietchen]] 19:19, 4 June 2010 (UTC)


and
:: Thanks Daniel. I'll do what I can to get approval (pending successful test edits) by the time you have a stable connection. Safe travels. --[[User:Chris Key|Chris Key]] 19:50, 4 June 2010 (UTC)


"Thus, it seems plausible that the structural impact of brain enlargement on the basicranium is manifested in the primate embryo,
:::We have permission from Dan Nessett to perform test edits on the test wiki only (not the live wiki). Once these are done we need to get further permission from Matt Innis. We must ensure that the bot only does a null edit, and then as long as me, you and Dan are satisfied I believe that Matt will give approval as he has already looked at the discussion ([http://forum.citizendium.org/index.php/topic,3209.msg30037.html#msg30037 see his comments]). --[[User:Chris Key|Chris Key]] 21:30, 4 June 2010 (UTC)


not in the fetus or the infant, and that the resulting flexion is carried through to adulthood with only minor alterations of angulation en route due to growth of other soft-tissue structures such as the larynx."
:::: I have made a Bot request. Please ensure that the summary of the bot reads is <code><nowiki>Category jog for [[:Category:Pages with too many expensive parser function calls|Pages with too many expensive parser function calls]]. [[CZ:Bot status/ExpensiveParserJog/Feedback|Give feedback.]]</nowiki></code> --[[User:Chris Key|Chris Key]] 23:02, 4 June 2010 (UTC)


:::::OK. --[[User:Daniel Mietchen|Daniel Mietchen]] 17:44, 5 June 2010 (UTC)


== About our new Psychology Editor ==


==={{pl|Mental disorder}}===
Hi, Daniel:


Wilson in Keller 2006:
John Calvin Moore joined us as a Psychology Editor yesterday and has already dipped his toes into the water by editing the [[Abnormal psychology]] article. As the only other active Psychology Editor that I am aware of, would you be so kind as to introduce yourself to him and perhaps assist him in learning the ropes about clusters, subpages and so forth? Regards, [[User:Milton Beychok|Milton Beychok]] 22:19, 17 June 2010 (UTC)


"“mental disorder,” is a fallacious, intrinsically non-
:Done. --[[User:Daniel Mietchen|Daniel Mietchen]] 22:48, 18 June 2010 (UTC)


Linnaean pseudotaxon. This construct so broadly conflates
::Hello Daniel, interesting stuff you have here on Schizophrenia. I know you are familiar with Harry Stack Sullivan. He made the distinction between Dementia Praecox (organic brain disease) and Schizophrenia, by stating that Schizophrenia was a product of maladaptive living or circunstances in the individuals life that causes the person to become Schizophrenic. I'll be using that concept within the Whitman article with the tumor. As to your suggestions about classrooms and students, I am not involved in anyway with that scenario, but if there is a project of mentoring or helping in some other way, please inform me and we'll work something out. Thanks for your attention! BTW, has your research correlated anything with GABA and Schizophrenia? [[User:John Calvin Moore|John Calvin Moore]] 02:59, 19 June 2010 (UTC)


distinct moieties – schizophrenia, depression, mania, diverse
:::Hi John, my research is focused on developing early diagnostic tests for [[schizophrenia]] (and other [[psychiatric disorder]]s, like [[Alzheimer's disease|Alzheimer's]]) by way of [[brain morphometry]]. I have no clinical experience with schizophrenia, but am fairly well acquainted with its literature, so that if you are interested in collaborating on some articles, schizophrenia could be a good start (incl. [[Harry Stack Sullivan|Sullivan]], albeit he is not very prominent on this side of the pond). I haven't touched [[GABA]] for more than a decade, and never really was into it. As for coursework, we'll see. --[[User:Daniel Mietchen|Daniel Mietchen]] 19:55, 22 June 2010 (UTC)


phobias, and even mental retardation – that it is ultimately
==stray article parts==
Daniel, thanks for marking those "Article 1" article orphans for deletion.  I wasn't very successful using the Eduzendium templates, so I've just started creating the articles the standard way and then adding the Eduzendium line to them, and that seems to be working.  Hopefully, I won't create any more of these.[[User:Pat Palmer|Pat Palmer]] 16:14, 10 July 2010 (UTC)


without demonstrable naturalistic validity."
==Eduzendium header==
Hi Daniel, I followed your advice and finally understood the process for creating new Eduzendium articles.  It works, thank you!  Now a question.  Here's the header that goes onto each course page (for my course): [[CZ:Special_Topics_2010/EZnotice]] .  It is awfully long; is there any way that the text (especially that stuff near the bottom) could be shortened so that it occupies less real estate on the page?  I'm finding it a bit instrusive.  Could all this stuff:
<pre>
This article is currently being developed as part of an Eduzendium student
project in the framework of a course entitled Special Topics at University
of Pennsylvania. The course homepage can be found at CZ:Special_Topics_2010.  


One of the goals of the course is to provide students with insider experience
in collaborative educational projects, and so you are warmly invited to join
in here, or to leave comments on the discussion page.


The anticipated date of course completion is 13 August 2010. One month after
that date, this notice shall be removed.


==={{pl|Multicellularity}}===
Besides, many other Citizendium articles welcome your collaboration!
</pre>
just be changed to this:
<pre>
This article is currently being developed as part of an Eduzendium student
project. The course homepage can be found at CZ:Special_Topics_2010


Boraas 1998 Phagotrophy by a flagellate selects for colonial prey: A possible origin of multicellularity
To provide students with experience in collaboration, you are warmly invited to
join in here, or to leave comments on the discussion page.


The anticipated date of course completion is 13 August 2010. One month after
that date, this notice shall be removed.
</pre>
It's OK if not but I thought I would ask.[[User:Pat Palmer|Pat Palmer]] 10:24, 12 July 2010 (UTC)


:Done. --[[User:Daniel Mietchen|Daniel Mietchen]] 18:00, 12 July 2010 (UTC)


==={{pl|Music perception}}===
==Food and Drug Administration > Catalogs >  Therapeutic Equivalence Code==
Pretty cool what you did to [[Food_and_Drug_Administration/Catalogs/Therapeutic_Equivalence_Code|Food and Drug Administration > Catalogs >  Therapeutic Equivalence Code]]. Do you have any suggestions on a better way to handle [[Preoperative_care/Beta-blocker_evidence_table|Preoperative care > Beta-blocker evidence table]] so that it shows on the subpages? - [[User:Robert Badgett|Robert Badgett]] 03:36, 14 July 2010 (UTC)


fritzsch 2006 ear development morphogenesis.pdf:
:Done. Used the same hammer ;-) --[[User:Daniel Mietchen|Daniel Mietchen]] 07:41, 14 July 2010 (UTC)


== Truth In Numbers ==


Thanks for your welcome! Have we met before?


"We recently provided new insights into the evolution of
I hope I can write some articles on Indonesian languages and literature here. I want to see whether this project is really different than Wikipedia. One of the few things that annoys me on English Wikipedia is the fact that it is based on consensus of general knowledge, not on the opinion of the experts. I have to admit that most of the time it is not relevant and it does not get into my way. However in couple of instances it quite annoying. Something which is said by a great number of people doesn't make it true. I was once involved in a silly discussion about the language of the motto on the coat of arms of Indonesia. It is actually in Old Javanese but someone, an American who taught English in Java thought it was in Sanskrit. Why? Because his sources, who were Indonesian laymen told him it was Sanskrit ...


the auditory system, including the cochlea (Fritzsch et al.,
However I will still edit Wikipedia and other Wikimedia projects, especially in other languages.  


2006)"
The Truth In Numbers will be available in October. You will be able to download the film or to buy the DVD also by then. I am not quite sure whether it is avaible by now as streaming video. The finished movie is a bit different than the trailer, which is a bit of a pity, as it is not only edited by Nick Hill but also Scott Glossermann.


Fritzsch, B., Pauley, S., Feng, F., Matei, V., Nichols, D.H., 2006. The
I just took a peek on ''Koguma Main Bola''. I have to say it is difficult for beginners! It uses complicated grammatical forms which can be avoided, but later on that :-)


evolution of the vertebrate auditory system: transformations
As for the charter draft, I think it is okay. One of the things that I like is that original research is allowed.


of vestibular mechanosensory cells for sound processing is
Actually I have always wanted to take a look and join Citizendium but it never materialized. Too bad other alternatives to Wikipedia such as Conservapedia generates more traffic than Citizendium.


combined with newly generated central processing neurons.
Cheers. [[User:Revo Arka Giri Soekatno|Revo Arka Giri Soekatno]] 06:54, 14 July 2010 (UTC)


Int. J. Comp. Psychol. 19, 1–24.
:Thanks, Revi. We haven't met before but I am active on several platforms for young scientists (the German equivalent of PNN as well as Eurodoc and ways.org), and in the framework of the latter I once made plans to get scientists in the developing world to contribute to the Wikipedias in their local languages. My initial focus then was on Central Asian languages, but I also had a look at the Swahili and Bahasa indonesia editions, from where I knew your name. However, this turned out to be even more difficult than getting them to contribute to the larger Wikipedias. Not sure yet whether opening Citizendium up to original research will help with that. --[[User:Daniel Mietchen|Daniel Mietchen]] 07:40, 14 July 2010 (UTC)


== Thanks ==


Thanks for your help copying over the charter comments. That was getting a little repetitive. --[[User:Chris Key|Chris Key]] 15:25, 16 July 2010 (UTC)


Fujioka 2003 Tonotopic representation of missing fundamental complex sounds in the human auditory cortex
:Thanks for your list of topics related to popular music and to topics from my bio.  The current definition of popular music seems to me unhelpful, but my own perspective is a materialist one that probably won't satisfy a lot of scholars who prefer aesthetics sanitized from economics.  I'll have a draft up in a bit, but with school starting, this is not an ideal time for in-depth work.
:--[[User:Joseph Byrd|Joseph Byrd]] 15:04, 31 July 2010 (UTC)


::If time is scarce (and it usually is), then I like to work on [[CZ:Definitions|definitions]] and [[CZ:related Articles|Related Articles]], so as to weave a web of context, on the basis of which the articles can be grown. Let me know if problems arise. --[[User:Daniel Mietchen|Daniel Mietchen]] 15:20, 31 July 2010 (UTC)


And thanks for catching my move gaffe on my User page and correcting it. [[User:Russell D. Jones|Russell D. Jones]] 16:18, 1 August 2010 (UTC)


Bermpohl 2006 Attentional Modulation of Emotional Stimulus Processing: An fMRI Study Using Emotional Expectancy
== Theory of multiple intelligences ==


This is well outside of my area of expertise, but you are listed as a psychology Editor so perhaps you'd be able to help. A new author is a little unsure as to what to do next, could you perhaps give him some guidance? [[Talk:Theory of multiple intelligences]]. Thanks. --[[User:Chris Key|Chris Key]] 05:19, 31 July 2010 (UTC)
:[http://en.citizendium.org/wiki?title=Talk%3ATheory_of_multiple_intelligences&diff=100695142&oldid=100694939 Done]. --[[User:Daniel Mietchen|Daniel Mietchen]] 14:15, 31 July 2010 (UTC)


== Thanks! ==


Bieser 1996 Auditory responsive cortex in the squirrel monkey: neural responses to amplitude-modulated sounds
Thanks for the suggestions! I anticipate they will be very helpful as I'm beginning to navigate this site, and I hope to help get some of those sites up to approved. Thank you, and I'm looking forward to much fruitful collaboration! [[User:Rachael Cantrell|Rachael Cantrell]] 13:05, 4 August 2010 (UTC)


Lefebvre 2008:
==Delete==
Hello Daniel Mietchen. I'm new here. Could you please help me? I want to delete a userpage, what should I do? Is there a template? Thank you, [[User:Ed Jussen|Ed Jussen]] 21:35, 4 August 2010 (UTC)
:You cannot delete pages, but we have the {{tl|speedydelete}} template to [[:Category:Speedy Deletion Requests|request Constables to delete pages]]. They will not normally delete userpages, but will do subpages thereof on such requests. If you tell me what page you are after, I can put the template in there, so that you can see how to do this. --[[User:Daniel Mietchen|Daniel Mietchen]] 21:41, 4 August 2010 (UTC)


"Lesion and neuronal recording techniques are useful in identifying precise areas crucial to the correct functioning of a given cognitive system, but they are incapable of mapping the whole set of areas that are active. In contrast, techniques like MRI, immediate early genes and receptor site mapping can inform us about how broad or localized should be our search for brain correlates of cognition. The techniques routinely compare neural activation during a particular cognitive task [e.g., imitation of observed movement, Iacoboni et al., 1999] to that of the closest control (e.g., movement or observation only), and thus underestimate the total number of brain areas active during cognitive processing. Bearing this in mind, the most frequent result of brain imaging studies is that a number of different localized centers distributed all over the brain are involved in each cognitive activity. For example, a meta-analysis of 64 MRI studies in humans reveals a very broad distribution of areas active in different types of human tool use situations [Lewis, 2006]. When the mapping of the areas is restricted to those that are reported in at least four of the 64 studies, eight areas in the cortex, plus areas in the cerebellum and basal ganglia appear to be involved. During macaque tool use, 10 areas show MRI activity, from different parts of the right and left cerebellum to parts of the basal ganglia and cortical areas such as the precuneus and inferior temporal cortex [Obayashi et al., 2001]. During cooperative interactions in a prisoner’s dilemma game, at least five cortical and subcortical areas are active in humans [Rilling et al., 2002]."
::I think that what you probably want is to delete your [[User:Ed Jussen/Lifecycle]] page now that you have uploaded that new article into the namespace. I would suggest that next time you create a personal [[User:Ed Jussen/Sandbox]] . That sandbox subpage can be used over and over again many times. All you have to do then is to simply delete (erase) the content of that page whenever you have finished a project and are ready to start another one. If you wish, I could create that sandbox for you ... just let me know. [[User:Milton Beychok|Milton Beychok]] 22:13, 4 August 2010 (UTC)


:::I placed the template. Thank you for your help. [[User:Ed Jussen|Ed Jussen]] 06:35, 5 August 2010 (UTC)


==Eduzendium==
Hi Dan, I've just been trying unsuccessfully to help Nancy after your comments. We're trying simply to set up a new course for this year on the same lines as last year; some of the articles we proposed last year were not used so we'd like to reinstate those as fresh options this year. I'm afraid I've stumbled over the mechanics, and don't know what's happened to the Eduzendium notice. Any help much appreciated! Thanks, [[User:Gareth Leng|Gareth Leng]] 15:15, 6 August 2010 (UTC)


==={{pl|Orang utan}}===
:OK, I'll set things up then. Probably tomorrow. --[[User:Daniel Mietchen|Daniel Mietchen]] 15:23, 6 August 2010 (UTC)


*Cited by Hossfeld 2005:
Hi Daniel, thanks for your help!!
[[User:Nancy Sabatier|Nancy Sabatier]] 15:32, 6 August 2010 (UTC)


Camper, P., 1784. Kurze Nachricht von der Zergliederung verschiedener Orang-Utans. Herrn Pieter
:Hi Daniel, I'll have a go at the articles. Could you help me setting up the Eduzendium notice about unapproved articles? should it be on each article or on the course homepage only? Thanks again for your help. [[User:Nancy Sabatier|Nancy Sabatier]] 09:22, 9 August 2010 (UTC)


Campers kleine Schriften. Part 2, vol. 1. Verlag S. L. Crusins, Leipzig, pp. 65 94.
:: Thanks, I made quite a mess with this first article, hopefully the next ones will be better! [[User:Nancy Sabatier|Nancy Sabatier]] 12:02, 9 August 2010 (UTC)


Camper, P., 1785. Nachricht vom Sprachwerkzeuge des Orang-Utan. Herrn Pieter Campers sämtliche
== New Physics Editor [[User:David William Tolfree]] ==


kleinere Schriften. Verlag S. L. Crusins, Leipzig.
Daniel, I am sure you will be interested in getting acquainted with our new Physics editor. [[User:Milton Beychok|Milton Beychok]] 20:14, 9 August 2010 (UTC)
== Thanks for the Dyscalculia edits ==
Thanks for the dyscalculia edits. I hope more people will add to the article. This is a little known learning disability that could use some face time. Thanks again![[User:Mary Ash|Mary Ash]] 20:01, 11 August 2010 (UTC)
:This is the first of your articles that hit an area of interest to me, so there may well be further interaction on the topic. --[[User:Daniel Mietchen|Daniel Mietchen]] 00:10, 12 August 2010 (UTC)


*{{:CZ:Ref:DOI:10.1007/s10329-008-0117-y}}
== Chipping at psychology ==
*A video from the supplementary material of <br>{{:CZ:Ref:DOI:10.1007/s10329-008-0117-y}}, showing a whistling 30-year old orangutan:
<center>{{CZ:Ref:DOI:10.1007/s10329-008-0117-y/Video}}</center>


==={{pl|Phenology}}===
Partially in response to [[John E. Mack]], I started [[transpersonal psychology]].
*[http://www.usanpn.org/?q=home USA National Phenology Network]
:"The USA National Phenology Network brings together citizen scientists, government agencies, non-profit groups, educators and students of all ages to monitor the impacts of climate change on plants and animals in the United States. The network harnesses the power of people and the Internet to collect and share information, providing researchers with far more data than they could collect alone."
:See also [http://latimesblogs.latimes.com/greenspace/2009/03/help-scientists.html this blog post about it].


==={{pl|Scholarly wiki}}===
Discovering that [[psychotherapy]] is an import, I split out [[psychoanalysis]] and [[humanistic psychology]], with the WP commented out; I think I can completely rewrite at the level here and give us a fresh start.  Unfortunately, my mother's library -- she was a psychiatric social worker -- is packed away.


Wada 2006:
Oh well. I can always do a Topic Informant article on the nuances of the ceiling cracks over my analyst's couch. [[User:Howard C. Berkowitz|Howard C. Berkowitz]] 01:22, 17 August 2010 (UTC)


"Figs. 10–21, Tables 1–6, and Appendix, which are published as supporting information on the PNAS web site, all cited below, show additional information."
:Thanks for the note. Don't have any plans for these at the moment unless there is a fire to extinguish somewhere. --[[User:Daniel Mietchen|Daniel Mietchen]] 01:26, 17 August 2010 (UTC)


::OK. Just wanted a Psychology Editor to know what I was doing, hopefully in a noncontroversial way. Apropos of fires, though, should I work on [[pyromania]]? [[User:Howard C. Berkowitz|Howard C. Berkowitz]] 01:36, 17 August 2010 (UTC)


:::What about starting with [[fire]], [[candle]], [[fire extinguisher]], [[fire brigade]] for background? --[[User:Daniel Mietchen|Daniel Mietchen]] 01:41, 17 August 2010 (UTC)


==={{pl|Sex determination}}===
::::You may be getting more than you expected with [[fire extinguisher]]. There is some material in [[9-11 Attack in New York]] about how not to do command and control for a high rise fire.


Schlichting 2008:
==Lost my picture==
Hello Daniel Mietchen. This picture Image:Lifetree.jpg miraculously disappeared. I really uploaded it[http://en.citizendium.org/wiki/Image:Lifetree.jpg#filehistory|here] but it left me. Only the thumb stayed. Can you maybe see what's wrong? Thank you in advance. I did not keep the original ... [[User:Ed Jussen|Ed Jussen]] 21:49, 18 August 2010 (UTC)
:Hi Ed, and thanks for the note. We have had some problems with image files recently, and so far, all of them could be solved. I have [http://reid.citizendium.org/bugzilla/show_bug.cgi?id=76 notified] the tech people of this case. --[[User:Daniel Mietchen|Daniel Mietchen]] 22:01, 18 August 2010 (UTC)
::Thank you, I uploaded this illustration again and from now I'll save them all on my computer> [[User:Ed Jussen|Ed Jussen]] 08:36, 19 August 2010 (UTC)
:::Thanks. Yes, this seems to be the best way to do it. --[[User:Daniel Mietchen|Daniel Mietchen]] 08:37, 19 August 2010 (UTC)


"Kim et al. (2006) reported that applying methyl farnesoate, a juvenile hormone for crustaceans, to females produced males in four species of cladocerans. The surprise of this result was not in the production of males per se, because methyl farnesoate treatment was already known to induce males in Daphnia, but the fact that, for three of these species, males had never been seen before. This unusual perturbation of the internal environmental system has produced a plastic response, a male, that is “an alternative phenotype of the genome of the female” (Minelli & Fusco 2006)."
== I would appreciate your comments ==


*Kim, K., A.A. Kotov & D.J. Taylor. 2006. Hormonal induction of undescribed males resolves cryptic species of cladocerans. Proc. R. Soc. Lond. B Biol. Sci. 273: 141–147.
Daniel, I have just written a new article and the title will be [[Smog]] when I upload it into the article namespace. It is currently in my sandbox at [[User:Milton Beychok/Sandbox]].


*Minelli, A. & G. Fusco. 2006. Water-flea males from the netherworld. Trends Ecol. Evol. 21: 474–476.
I know that you are probably not an expert on the subject. However, I would very much appreciate your review of it and giving me any comments, additions, deletions, typo corrections, or revisions you care to offer on my sandbox talk page. I am fairly sure that there must be some parts which could be better written from the viewpoint of clarity and understanding.


Thanks in advance, [[User:Milton Beychok|Milton Beychok]] 02:17, 22 August 2010 (UTC)


:Hi Milt, wrong timing, but I will try after coming back from [[User:Daniel_Mietchen/Talks/COASP_2010/Start|this conference]]. --[[User:Daniel Mietchen|Daniel Mietchen]] 16:48, 22 August 2010 (UTC)


==={{pl|Shape description}}===
==Creating subpages==
Hello Daniel, I have begun to write articles but don't know how to create a "subpage" .The instructions for this are unclear to me. So could you help me with that please? The first article which will need  a subpage is [[Diglossia]]. Thanks! [[User:Stefan Olejniczak|Stefan Olejniczak]] 11:47, 23 August 2010 (UTC)


:Hi Stefan! Thanks for dropping by. I just set the subpages up via [http://en.citizendium.org/wiki?title=Special:Contributions&offset=2010-08-23+12%3A56%3A28%2B00&limit=5&target=Daniel+Mietchen&month=&year= these edits]. In doing so, I made one mistake that I also corrected in the process. Please take a look and let me know if something is not clear. --[[User:Daniel Mietchen|Daniel Mietchen]] 13:05, 23 August 2010 (UTC)


::Hello Daniel. It looks OK, thanks. And could you do the same now for [[Monophthong]] please?  [[User:Stefan Olejniczak|Stefan Olejniczak]] 13:08, 23 August 2010 (UTC)


Mak 2007:
:::Can you give it a try? Just start by clicking the "[show]" link and do whatever you think is appropriate. I will go after you and correct things if necessary. --[[User:Daniel Mietchen|Daniel Mietchen]] 13:12, 23 August 2010 (UTC)


"Here, we present a new moment method for describing and comparing molecular shapes in 3D. This method may be viewed as an extension for the spherical harmonics expansion that employs Zernike radial functions [15] to sample objects over regions rather than surfaces."
:::Sorry, I clicked on " ...the "metadata template" and tried to fill in as it is told in the instructions, but it did not seem to work. So I think I will need more help with this. [[User:Stefan Olejniczak|Stefan Olejniczak]] 14:15, 23 August 2010 (UTC)


[15] F. Zernike, Diffraction theory of the cut procedure and its improved form, the phase contrast method, Physica 1 (1934) 689–704.
:::: You can use this link: [[Special:MetadataForm]] which gives you a form to fill in. (But following the Metadata link, filling in, saving it, creating talk page (with "subpages") and then using the links on the subpages template should also work.) --[[User:Peter Schmitt|Peter Schmitt]] 14:38, 23 August 2010 (UTC)


:::::Hi Peter, thanks a lot! This should help. [[User:Stefan Olejniczak|Stefan Olejniczak]] 14:53, 23 August 2010 (UTC)


:::::: It is important to note that for best results you should use [[Special:MetadataForm]] before creating the article. --[[User:Chris Key|Chris Key]] 15:44, 23 August 2010 (UTC)


"See Zhang and Lu [16] for a review on shape description"
== What has happened to our Welcome page? ==


[16] D. Zhang, G. Lu, Review of shape representation and description techniques, Pattern Recog. 37 (2004) 1–19.
The [http://en.citizendium.org/wiki/Welcome_to_Citizendium Welcome page] has a big white space in the left column (of the two column set-up) and the New Draft of the Week in the right column goes on and on and on ... way beyond what is ever has done before this.


Is someone playing around with it? Looking at the History doesn't seem to explain what happened. [[User:Milton Beychok|Milton Beychok]] 09:01, 18 September 2010 (UTC)


: The reason: Editing the article changed the "NDotW"-markup. I added markup. To me, this proves that the page should not be transcluded. Instead an edited excerpt should be used. --[[User:Peter Schmitt|Peter Schmitt]] 12:25, 18 September 2010 (UTC)


"An extension of the spherical harmonic expansion method is presented here that enables regions (bodies) rather than contours (surfaces) to be described and which lends itself favourably to the construction of rotationally invariant shape descriptors."
::To me, this prove is not convincing &mdash; the transclusion has been in use for over a year and rarely caused problems of this kind. But perhaps we should use a template on the featured article or draft that indicates their being featured, and asks for special caution with the markup. In any case, we have a new featured draft now. --[[User:Daniel Mietchen|Daniel Mietchen]] 12:39, 18 September 2010 (UTC)


"The extension of spherical harmonics to incorporate radial sampling, whilst taking care to maintain the desirable orthonormality and completeness relationships, has led to the construction of functions equivalent to 3D Zernike functions.We have shown that these functions are well-suited to present molecular shapes and can successfully overcome some of the limitations of surface harmonics. This extra power comes at an additional computational cost per coefficient and also in that many more coefficients are required for the reconstruction. For shape matching, however, rotationally invariant descriptors may be employed thus reducing the number of coefficients greatly."
== Does the new [[Volatility (chemistry)]] article relate to Biology or Physics?  ==


-->!"Although, the reconstruction quality is superior compared to the pure spherical harmonics approach, the improvement in terms of classification and shape matching is only marginal."
Daniel, does the new article [[Volatility (chemistry)]] relate meaningfully to physics or biology? If you think so, I will add either Physics or Biology as categories in the Metadata template so that it can be considered for nomination by you or another physics or biology editor. My reason is that there are no active engineering or chemistry editors other than myself and I am not eligible to nominate it.


I sure wish we could coax Paul Wormer into returning. [[User:Milton Beychok|Milton Beychok]] 05:05, 24 September 2010 (UTC)


:Volatility is very relevant to things like [[pheromone signalling]], so I added in Biology. Yes, getting Paul back in is a goal of mine too. But I guess we will have to do some clean-up first in how we handle expertise, especially in certain areas. --[[User:Daniel Mietchen|Daniel Mietchen]] 09:52, 24 September 2010 (UTC)


::As a follow-up about [[Volatility (chemistry) ]], would you now please consider nominating it for approval? Please let me know. [[User:Milton Beychok|Milton Beychok]] 16:04, 24 September 2010 (UTC)


:::OK, I will take a closer look somewhen these days. --[[User:Daniel Mietchen|Daniel Mietchen]] 16:10, 24 September 2010 (UTC)


Khairy 2008:
::::Thanks, I will wait to hear from you whenever. [[User:Milton Beychok|Milton Beychok]] 17:05, 24 September 2010 (UTC)
===Other kinds of volatility===
In computers, volatile memory loses its contents when power is applied; the contents of nonvolatile memory are persistent.


"The prior information about the topology of a 3D object
Perhaps chemistry or perhaps military, the terms nonpersistent and persistent, when applied to chemical weapons, really mean more volatile (e.g., phosgene, sarin) or less volatile (e.g., mustards, VX). [[User:Howard C. Berkowitz|Howard C. Berkowitz]] 20:45, 24 September 2010 (UTC)


can be utilized by parameterizing the shape mathematically
:Howard, I know about volatile memory in computers as well as volatile stocks, markets, etc. in the world of finance. Then there is volatile as a description of human behavior.


(Terzopoulos et al., 1988; Staib and Duncan, 1996)."
:That's why I named this article [[Volatility (chemistry)]] so as to disambiguate it from the many  other meanings of the word "volatile". I really think that volatility as a measure of persistence for poison gases is a military term rather than a chemistryl one. [[User:Milton Beychok|Milton Beychok]] 20:57, 24 September 2010 (UTC)


::Added to disambiguation page. [[User:Howard C. Berkowitz|Howard C. Berkowitz]] 21:15, 24 September 2010 (UTC)


== More about [[Volatility (chemistry)]] ==


Kass, M., Witkin, A., Terzopoulos, D., 1988. Snakes: active contour models. International Journal of Computer Vision 1, 321–331.
Daniel, as you suggested, I added a new section to the article that discusses ionic liquids and the ongoing research into how odors are used as social behavior signals by insects as well as by mammals. [[User:Milton Beychok|Milton Beychok]] 14:56, 2 October 2010 (UTC)
:Thank you, Milt. I am still on the road but will get to it as soon as I can. It would be best for me to rework those passages directly, and I would prefer 3-editor approval here anyway. --[[User:Daniel Mietchen|Daniel Mietchen]] 20:00, 2 October 2010 (UTC)
::What help is needed? Mind you, if one considers the perfumes worn by some people, sociology is probably in order to explain why they are not killed. [[User:Howard C. Berkowitz|Howard C. Berkowitz]] 20:25, 2 October 2010 (UTC)
:::I plan to rework the biological section and add a few words on intramolecular prerequisites for volatility. This would require a third editor for approval. I think we should stick to the chemistry here, not branch out. --[[User:Daniel Mietchen|Daniel Mietchen]] 20:31, 2 October 2010 (UTC)
::::Hi, Daniel ... just a gentle reminder now that you are back. [[User:Milton Beychok|Milton Beychok]] 17:45, 14 October 2010 (UTC)
:::::I hope to get to it over the weekend. --[[User:Daniel Mietchen|Daniel Mietchen]] 17:46, 19 October 2010 (UTC)


::::::Daniel, just a gentle reminder about your  "plan to rework the biological section and add a few words on intramolecular prerequisites for volatility" ... the article is still waiting. Thanks, [[User:Milton Beychok|Milton Beychok]] 23:56, 17 November 2010 (UTC)


:::::::I actually went through two papers on the matter that weekend, but took my notes on paper and haven't found the time & mood to put them in here. I also thought about structuring some related articles (e.g. [[pheromone]] or [[olfactometre]]), and I was looking for images on the matter. So I am confident it will happen, but can't tell you when. --[[User:Daniel Mietchen|Daniel Mietchen]] 00:35, 18 November 2010 (UTC)


Staib, L.H., Duncan, J.S., 1996. Model-based deformable surface finding for medical images. IEEE Transactions on Medical Imaging 15 (5), 720–731.
==Please see my roast turkey page comments==
The question was not to spell out the word centigrade but whether to spell out the word degrees, which I did, or to use the degree symbol. Your edits returned the article so that it is now written both ways.[[User:Mary Ash|Mary Ash]] 20:52, 13 October 2010 (UTC)


== Sorry about that! ==


I hate when people get my name wrong. I'll make sure that no-one spelled [http://en.citizendium.org/wiki?title=User%3AManaging_Editor&diff=100720666&oldid=100720584 your's wrong] before running the software.  [[User:D. Matt Innis|D. Matt Innis]] 12:55, 14 October 2010 (UTC)
:As long as it's a wiki page I can edit, I don't mind. Please also check for [http://en.citizendium.org/wiki?title=User:Editorial_Council&diff=prev&oldid=100720675 this typo] and the erroneous listing I reported by email. --[[User:Daniel Mietchen|Daniel Mietchen]] 13:42, 14 October 2010 (UTC)
::Got it (and did catch one). [[User:D. Matt Innis|D. Matt Innis]] 14:36, 14 October 2010 (UTC)


Terzopoulos, D., Witkin, A., Kass, M., 1988. Constraints on deformable models: recovering 3D shape and nonrigid motion. Artificial Intelligence 36 (1), 91–123.
== Regarding lemma article, [[Thylakoid]] ==


Daniel, regarding your recently created lemma article, [[Thylakoid]]: I had already created an article entitled, [[Thylakoids]]. Probably should have named it in the singular.  Redirect from the lemma doesn't seem to work.


Can I delete the lemma and move [[Thylakoids]] to [[Thylakoid]]?  Please advise.  [[User:Anthony.Sebastian|Anthony.Sebastian]] 00:33, 26 October 2010 (UTC)


D. Healy, D. Rockmore, P. Kostelec, and S.Moore. FFTs for the 2-sphere — improvements and variations. The Journal of Fourier Analysis and Applications, 9(4):341–385, 2003.
:Okay, I fixed it. [[Thylakoid]] now redirects to already existing [[Thylakoids]]. Probably should reverse order. [[User:Anthony.Sebastian|Anthony.Sebastian]] 02:41, 26 October 2010 (UTC)


::I [http://en.citizendium.org/wiki?title=Thylakoid&diff=100725262&oldid=100725217 asked] the constabulary to reverse the redirect. --[[User:Daniel Mietchen|Daniel Mietchen]] 07:49, 26 October 2010 (UTC)


:::Not sure what "reverse the redirect" means, as no article with the singular exists, so I supplemented your request, for clarity, I hope: [http://en.citizendium.org/wiki/Thylakoid here]. [[User:Anthony.Sebastian|Anthony.Sebastian]] 01:30, 7 November 2010 (UTC)


Shen 2006:
== User page decision ==


"Using SPHARM, many tasks can be accomplished in the frequency domain more efficiently, such as shape matching, surface denoising, shape analysis [17]"
Well done, Daniel, keep it up. [[User:Aleta Curry|Aleta Curry]] 21:50, 5 November 2010 (UTC)
:And I concur![[User:Mary Ash|Mary Ash]] 22:14, 5 November 2010 (UTC)


[17] S. C. Joshi, M. I.Miller, and U. Grenander. On the geometry and shape of brain sub-manifolds. Int. J. of Pat. Rec. & Art. Int., Special Issue on MRI, 11(8):1317–1343, 1997.
::Thanks! --[[User:Daniel Mietchen|Daniel Mietchen]] 22:23, 5 November 2010 (UTC)


==Approval?==
Hi Daniel, can you take a look at [[Interspike interval histogram]] with a view to approval, if you feel competent? it's a short article but says as much as I think needs saying. I wrote it so can't act.[[User:Gareth Leng|Gareth Leng]] 13:47, 10 November 2010 (UTC)
:Upon first sight, I would think much of this would have to go to [[Interspike interval]] first. Will definitely chime in by the end of the week. --[[User:Daniel Mietchen|Daniel Mietchen]] 15:04, 10 November 2010 (UTC)
::I commented at [[Talk:Interspike interval histogram]]. --[[User:Daniel Mietchen|Daniel Mietchen]] 23:30, 12 November 2010 (UTC)


== We have started our campaign for donations and we already have $372 ==


Morris 2005:
Daniel, I just wanted to let you know that we started our drive for donations a few hours ago and we already have $372. Regards, [[User:Milton Beychok|Milton Beychok]] 05:30, 11 November 2010 (UTC)
:Too late to be news - I already tested the button. --[[User:Daniel Mietchen|Daniel Mietchen]] 05:34, 11 November 2010 (UTC)


"A novel technique is presented for the comparison of protein binding pockets. The method uses the coefficients of a real spherical harmonics expansion to describe the shape of a protein’s binding pocket. Shape similarity is computed as the L2 distance in coefficient space. Such comparisons in several thousands per second can be carried out on a standard linux PC."
:: Daniel, it looks like you added the donate button (which I presume is the one that Chris created) and it sure  is simpler than my manual instruction. Thanks very much!! The whole [[CZ: Donate]] article looks very professional now. [[User:Milton Beychok|Milton Beychok]] 07:43, 11 November 2010 (UTC)


Q:How are the L2 distance and L2 norm defined?
:::Daniel, do you think it might be helpful to add a sentence to [[CZ:Donate]] explaining that donors do not need to log into citizendium@hotmail.com nor do they need to register to create their own PayPal account. The Donate button may possibly confuse some donors and they may believe that they must create their own PayPal account. What do you think? [[User:Milton Beychok|Milton Beychok]] 08:18, 11 November 2010 (UTC)


::::Done. Can you start a stub on [[PayPal]]? I don't know them very well. --[[User:Daniel Mietchen|Daniel Mietchen]] 08:52, 11 November 2010 (UTC)


:::::Will do, but it may be quite some while. Much too busy with MC and donation drive at the moment. [[User:Milton Beychok|Milton Beychok]] 01:37, 12 November 2010 (UTC)
==War criminals and crimes==
The term war criminals and war crimes are accurate and factual. The Nazi war criminals were convicted for their war crimes by a war tribunal. All this is based on fact and documented. I'm not sure what the problem is when it comes to using these historically accurate terms. You can not re-write history to sanitize it. I hope I understood the problem correctly between the interested parties. Finally, page blanking is a no-no at some wikis. I don't know about here, but I would not do it myself. MHO [[User:Mary Ash|Mary Ash]] 16:23, 15 November 2010 (UTC)


"Mathematically there are severalways of describing and representing shapes including triangulations, polygons, distance distributions
:It's a bit more nuanced in this case, as Hitler and Mengele, for example, never appeared before a court. Nevertheless, there is historical reason to use the term, in these specific cases, and at this specific time. This is some of the material I would have placed on the blanked and locked page.
:Martin is correct that something such as "alleged criminal" might be used today, but this is [[presentism]] as applied to [[historiography]].  Direct quotes should never be redacted for reasons of political correctness, and I've been attempting to explain the usage of Mengele's time. I note, for example, that the four-power proceedings at Nuremberg was titled "trial of the major war criminals".  That trial also criminalized membership in the SS, and there is little question Mengele was an SS officer. [[User:Howard C. Berkowitz|Howard C. Berkowitz]] 17:38, 15 November 2010 (UTC)


and landmark theory. The focus here will be on functional forms. Functions can be either local (piecewise, such as splines) or global in which the whole shape is described by an often very complex expression. Global representations are often termed parametric as the whole shape can be reduced to a number of parameters and each parameter affects the entire shape. Functions can either be explicit, meaning that one coordinate is expressed in terms of the others, or implicit, meaning that the surface points satisfy a given equation (isosurfaces). For example, spherical harmonics can be used for explicit functions, whereas super- and hyperquadrics are implicit representations."
::Mary, I do not see why you posted this comment here on my talk page instead of any of the places concerned with the debate. Since you used "you" here without any further qualifiers, I assumed that you were addressing me and that what could otherwise (e.g. on one of the article talk pages) be rather neutral comments were in fact severe accusations. I have neither denied war crimes nor tried to re-write history, nor blanked a page, nor edited either of the disputed pages myself. What I ''did'' do is [http://en.citizendium.org/wiki/CZ:Managing_Editor/2010/2/References_to_war_criminals react to a request for clarification of the usage of these terms] and [http://en.citizendium.org/wiki?title=Talk:War_crime&oldid=100732835#Content_ruling_by_the_Managing_Editor rule that the blanked page be replaced by some meaningful text]. In light of David Finn's comments below, I am willing to consider this a simple misunderstanding. I apologize for my part in it, and I have revised my original comment accordingly. --[[User:Daniel Mietchen|Daniel Mietchen]] 09:03, 19 November 2010 (UTC)


:::Please be more careful with the terms you throw around, Daniel.


:::Mary said:
::::''Finally, page blanking is a no-no at some wikis. I don't know about here, but I would not do it myself.''
:::She did '''not''' say that you blanked the page. She did not say that '''anyone''' blanked the page. She simply said that the page was blanked, which is a fact. How you interpreted that as an accusation that '''you''' blanked the page is not quite clear, but, to use your words, it seems that you did not ''understand the problem correctly'' when you replied that she was accusing you.


==={{pl|Single-nucleotide polymorphism}}===
:::I would also note that Mary is using '''you''' in her initial comment to refer to the plural, although I realize this may have been too nuanced a use of English for some.
:::Nonetheless, your counter of having been falsely accused was ill-thought out. Please revise. [[User:David Finn|David Finn]] 08:20, 19 November 2010 (UTC)


Gibson 2008:
::::Thank you, David, for reading so attentively and for being frank. I have revised my comment. --[[User:Daniel Mietchen|Daniel Mietchen]] 09:03, 19 November 2010 (UTC)


"Single Nucleotide Polymorphisms (SNPs, pronounced ‘‘snips’’), which are variations in single bases that occur on the order of one per 100 bases of DNA (Gregory
:::::No problem. I am going to take a break now, and I apologise that this and my other posts have been slightly abrasive. I really want there to be a good environment that promotes editing so that I can do some, but I found out today that someone who I would consider to be a great influence on my Citizendium contributions is being debated on in a negative way and it rather upset me. Howard is our most prolific contributor and has always been willing to compromise and collaborate in my dealings with him. I have also noted his ongoing relationship with Mary Ash which, although initially rocky, did serve both them and Citizendium well. I appreciate you taking the time to re-read your words, and also notifying Mary of that. Cheers. [[User:David Finn|David Finn]] 09:37, 19 November 2010 (UTC)


& Gilbert, 2005)."
== Eduzendium article metadata pages ==


Gregory, S., & Gilbert, J. (2005). Strategies for genotype generation. In Haines, J. L., Korf, B. R., Morton, C. C.,
Thank you for your message on my User_talk page and for the new BEE 4640 home page on CZ. The metadata template task has me thoroughly confused. I followed the directions blindly and ended up with the following error message: < CZ:Cornell University 2010 BEE 4640 Bioseparation Processes


Seidman, C. E., Seidman, J. G., & Smith, D. R. Eds. Current protocols in human genetics (Vol. S47). New
The ((subpages)) template is designed to be used within article clusters and their related pages.
It will not function on CZ pages.
Retrieved from "http://en.citizendium.org/wiki/CZ:Cornell_University_2010_BEE_4640_Bioseparation_Processes/Metadata_template"
Category: Misplaced subpage"


York, NY: Wiley and Sons, Inc.. pp. 1.3.1–1.3.16.
I have begun creating new articles as needed using the "create new article with subpages" worksheet, though they lack the template structure set up earlier in the process. [[CZ:Cornell_University_2010_BEE_4640_Bioseparation_Processes/Template_article]]


--> look for other source
Three students want to write about aspects of [[chromatography]], expanding the existing stub article to include material on a) chromatographic methods (e.g. gas chromatography, HPLC, paper chromatography), b) adsorbent types (e.g. ion exchange, reverse phase, size exclusion) and c) chromatography theory (e.g. adsorption isotherms and column dynamics). Do you recommend that they work directly on the existing draft, or create new articles within the Eduzendium category, which the Editors can later merge as they see fit?


If you are too busy with the hosting/management issue to assist at the moment, please feel free to refer me to another editor.  Thank you.  [[User:Jean B. Hunter|Jean B. Hunter]] 03:13, 17 November 2010 (UTC)


:Hi Jean, thanks for the feedback on the Eduzendium templates - there is certainly room for improvements, and they have not been integrated with [[Special:MetadataForm]], since the latter does not yet allow customized preloading of content. The way things are supposed to work is the following:
:#Go to the course homepage and add the titles of new articles, as shown [http://en.citizendium.org/wiki?title=CZ:Cornell_University_2010_BEE_4640_Bioseparation_Processes&diff=prev&oldid=100732977 here], using [[dielectrophoresis]] as an example.
:#Follow the instructions displayed for Dielectrophoresis: Open [[Template:R_EZ/doc/How_to_start_your_articles|this page]] in a separate tab or window to help you guide through the process, then go back to the window with the course homepage and click the button for Dielectrophoresis and try to follow the guide (reloading the course homepage after each "save" step is required). If there is anything not clear, please drop me another note - we really want these templates to be useful and will get rid of them if they are not. I have fixed the formatting for [[electrophoresis]].


==={{pl|Spherical coordinates}}===
:The error message you get about subpages is normal, since Eduzendium articles (and the course-specific templates) are in the CZ: [[CZ:Namespaces|namespace]], for which the {{tl|subpages}} template system was not designed. The articles to be created for the course, however, will all be in the main namespace, where the subpages template will function properly and set up the headers with links to the subpages.


(theta) is taken as the polar (colatitudinal) coordinate
:As for [[chromatography]], merging is complicated and very few people on the wiki have the technical permission to do that. So I would suggest that the students either jump right into the existing article, preferably after having familiarized themselves with [[CZ:Article mechanics|basic formatting]].
:--[[User:Daniel Mietchen|Daniel Mietchen]] 09:49, 17 November 2010 (UTC)


(phi) as the azimuthal (longitudinal) coordinate
::Mr. Mietchen, I began an article [[Crossflow membrane filtration]] without realizing there was a template already set up for our BEE 4640 course, called [[crossflow filtration]]. Professor Hunter suggested I seek your help in remedying the situation, as there is no need to have both. Can you point me in the correct direction? Thank you. [[User:Justin D. Finkle|Justin D. Finkle]] 19:25, 17 December 2010 (UTC)


:::Hi Justin,
:::no need to call anyone Mr. here - we generally use first names instead, though you are probably right in treating your professor differently.
:::I moved your [[Crossflow Membrane Filtration]] to [[Crossflow membrane filtration]] to go conform with our [[CZ:Naming conventions]] and transferred the BEE 4640 formatting to it. I will ask Jean for his opinion on whether the final article title should be [[Crossflow filtration]] or [[Crossflow membrane filtration]]. --[[User:Daniel Mietchen|Daniel Mietchen]] 21:22, 17 December 2010 (UTC)


::::Hi Daniel,
::::Let's keep it in its current form [[Crossflow membrane filtration]]. Thanks for your help. [[User:Jean B. Hunter|Jean B. Hunter]] 21:55, 17 December 2010 (UTC)


:::::Thank you both for the help. [[User:Justin D. Finkle|Justin D. Finkle]] 23:56, 19 December 2010 (UTC)


== New Biology Editor ==


==={{pl|Spherical harmonics}}===
We have a new Biology editor named [[User:Dorian Q. Fuller|Dorian Q. Fuller]]. Perhaps you may wish to put a welcome message on his Talk page. [[User:Milton Beychok|Milton Beychok]] 16:47, 17 November 2010 (UTC)


Morris 2005:
== Emails & forum messages ==


"Spherical harmonics, Ylm(è, ö), are single-valued, smooth (infinitely differentiable), complex functions of two variables, è and ö, indexed by two integers, l and m. In quantum physics terminology, l is the angular quantum number and m the azimuthal quantum number. Roughly speaking, l gives the number of local minima of the function and therefore represents a spatial frequency. [See any quantum  mechanics or functional analysis textbook for more definitions and properties, e.g. Cohen-Tannoudji et al. (1977) and Edmonds (1996).] Spherical harmonics form a complete set of orthonormal functions and thus form a vector space analogue to unit basis vectors. In the same way that vector projections onto each axis (scalar product between vectors) can be used to describe any vector in the familiar form x = (x, y, z)T, expansion coefficients (scalar product between functions) can be used to describe functions. Any (square-integrable) function of ƒÆ and ƒÓ can be expanded as follows: f (ƒÆ, ƒÓ) = ‡�l =0 l �m=.l clmYlm(ƒÆ, ƒÓ). (1)
I was away for two days and now have more than a hundred of CZ messages in my inbox, and several hundreds of forum messages have been posted since I looked last. Will take a while to crawl through, and I will likely not respond to all that I normally would. If you think there is a post or message I should absolutely attend to, please give me a reminder here. If it absolutely has to remain private, then please send me a brief reminder message with "Citizendium reminder" in the subject line. Thanks! --[[User:Daniel Mietchen|Daniel Mietchen]] 09:27, 21 November 2010 (UTC)


Note that this expansion is exact and not merely an approximation. Errors are introduced by limiting the series to a certain order of  l. A second source of error arises from the fact that the surface to be modelled need not be a function of ƒÆ and ƒÓ. For a closed surface in 3D to be single-valued and therefore a function of ƒÆ and ƒÓ requires that any ray leaving the expansion centre should only penetrate the surface once, i.e. a continuous mapping exists between the surface and the unit sphere S2. Such figures are called single-valued surfaces or star-shape surfaces (Fig. 1)."
== Free space ==


"As spherical harmonics enjoy mathematically convenient rotational properties—the coefficients can be rotated in the same way as vectors with so-called Wigner matrices (Edmonds, 1996; Chaichian and Hagedorn, 1997)—the orientation convention introduced above is merely to speed up the process by avoiding the need to search for optimal rotations between coefficients."
I wonder if you would have an interest in contributing to the new article [[Free space (electromagnetism)]]?  [[User:John R. Brews|John R. Brews]] 20:29, 25 November 2010 (UTC)
:Thanks for your note, John - I will see what I can do. --[[User:Daniel Mietchen|Daniel Mietchen]] 15:32, 29 November 2010 (UTC)


"Another approach would be either to store and search for all axis flips or to fall back on the optimization problem of finding the best alignment. An attractive alternative would be the use of rotationally invariant descriptors (Kazhdan et al., 2003)."
== ME request ==


--> Kazhdan,M., Funkhouser,T. and Rusinkiewicz,S. (2003) Rotation invariant spherical harmonic representation of 3D shape descriptors. In Kobbelt, Schröder and Hoppe (eds) Eurographics Symposium on Geometry Processing. EG Digital Library.
Please see [[Talk:Wikileaks]]. [[User:D. Matt Innis|D. Matt Innis]] 19:45, 4 December 2010 (UTC)
:Thanks for your note. I am still on the road and won't be back to normal before Monday evening. The matter seems too complex to be resolved on the fly, so I think that locking the page just for the two discussants is the best for the time being, and I will get back to the matter as soon as I can. --[[User:Daniel Mietchen|Daniel Mietchen]] 00:57, 5 December 2010 (UTC)


::Thanks for the response.  The article is currently unlocked to all as Sandy has volunteered to try a rewrite. I'll follow your advice if it should flare up again. [[User:D. Matt Innis|D. Matt Innis]] 01:17, 5 December 2010 (UTC)


::: I see you've taken care of it already, thanks! I'll enforce your ruling. [[User:D. Matt Innis|D. Matt Innis]] 01:21, 5 December 2010 (UTC)


Mak 2007:
== Final reminder about [[:Volatility (chemistry)]] ==


"Here, we present a new moment method for describing and comparing molecular shapes in 3D. This method may be viewed as an extension for the spherical harmonics expansion that employs Zernike radial functions [15] to sample objects over regions rather than surfaces."
Hi, Daniel: I know you have been busy ... we all are.  But it was back in early October when I added the discussions that you asked to be included in the subject article ... and which you promised to re-work.  


[15] F. Zernike, Diffraction theory of the cut procedure and its improved form, the phase contrast method, Physica 1 (1934) 689–704.
I promise that this is my last reminder. Happy Christmas! [[User:Milton Beychok|Milton Beychok]] 21:48, 13 December 2010 (UTC)


"An extension of the spherical harmonic expansion method is presented here that enables regions (bodies) rather than contours (surfaces) to be described and which lends itself favourably to the construction of rotationally invariant shape descriptors."
:Hm - sorry, Milt. I have moved it up my list again, but may need another reminder. --[[User:Daniel Mietchen|Daniel Mietchen]] 22:14, 13 December 2010 (UTC)


"The extension of spherical harmonics to incorporate radial sampling, whilst taking care to maintain the desirable orthonormality and completeness relationships, has led to the construction of functions equivalent to 3D Zernike functions.We have shown that these functions are well-suited to present molecular shapes and can successfully overcome some of the limitations of surface harmonics. This extra power comes at an additional computational cost per coefficient and also in that many more coefficients are required for the reconstruction. For shape matching, however, rotationally invariant descriptors may be employed thus reducing the number of coefficients greatly."
== Approvals help please ==


-->!"Although, the reconstruction quality is superior compared to the pure spherical harmonics approach, the improvement in terms of classification and shape matching is only marginal."
Hi Daniel


I'm requesting approval on [[Miniature Fox Terrier]], which has been sitting stable for a good long while, and which I can't approve as author, and [[Heterotaxis]].  Can you spare the time to lend a hand? [[User:Aleta Curry|Aleta Curry]] 00:29, 14 January 2011 (UTC)


:Hi Aleta, I am afraid both articles are beyond the areas in which I can approve, but I will check them (had actually followed the drafting of Heterotaxis at the time) and see what I can do. --[[User:Daniel Mietchen|Daniel Mietchen]] 12:04, 15 January 2011 (UTC)


check Koenderink, J. J. (1990) Solid Shape, MIT Press, Cambridge, MA.
::None of our currently active biology editors really work in quite the right field for either of these articles.  Perhaps it is time to consider trying an experiment.  For a long while now, I have wondered whether we could convince a non-citizen with the appropriate expertise to review and approve one of our articles. If the article is good enough and we make the process easy enough, we might attract a new member or establish a sort of consultant relationship. Would someone like to make an announcement asking whether anyone has a friend who would be qualified to approve one of these articles? --[[User:Joe Quick|Joe Quick]] 15:51, 15 January 2011 (UTC)
==User Discussion Page and Warning Removal==
''The discussion in this section is incomplete, since [[User:Mary Ash|Mary]] has [http://en.citizendium.org/wiki?title=User_talk:Daniel_Mietchen&diff=next&oldid=100751862 removed] her initial contributions to it. Peter's [http://en.citizendium.org/wiki?title=User_talk:Daniel_Mietchen&curid=100050477&diff=100751857&oldid=100751834 second comment] (still present below) contains all there is to say about the matter.''


(cited by duncan & olson 1993)
:Yes, the email said that you could clear your talk page, to which I did not object. Note that I commented on the archived thread. --[[User:Daniel Mietchen|Daniel Mietchen]] 02:53, 30 January 2011 (UTC)
:::Mary, there appears to be a misunderstanding concerning your talk page.  Daniel left his remark on your archived talk page.  Anyone can do this.  Your talk page was not reverted by Daniel and no-one else has reverted his edit either.  I understand that when things are tense, misunderstandings can occur.  This only means that it is very important that everyone double check and reconsider before clicking the 'send' button. You should also consider giving people 24 hours to respond to your emails. [[User:D. Matt Innis|D. Matt Innis]] 16:18, 30 January 2011 (UTC)
::::: Mary, the diff you cite does not show a revert but a comment added on your archived talk page, just as Daniel has indicated above. --[[User:Peter Schmitt|Peter Schmitt]] 17:18, 30 January 2011 (UTC)
: Be reasonable, Mary! There is no reason at all for your indignation:
:* Nobody touched your user page
:* Talk pages are not taboo. There is nothing wrong with adding a comment to a section on an archived talk page. There is only one "threat": It may remain unnoticed.
:* Neither your talk page nor your archived talk pages were "reverted" or "rolled back".
:* If you read what Daniel wrote then you will see that he did not issue a second warning. On the contrary, he "deleted" the first one.
:* Doing so on an archived page is much more discreet than doing it on the current talk page. It shows that he accepts its removal from the talk page.
:* Daniel's comment was -- as his signature shows -- an official message by the ME. He is fully authorized to leave such messages.
:--[[User:Peter Schmitt|Peter Schmitt]] 18:47, 30 January 2011 (UTC)
::On the advice of a esteemed CZ contributor I have removed all comments concerning this matter. I will be leaving an opinion piece on my user page instead. If I accidentally removed any other user comments I apologize in advance. My only intent was to remove my own comments. [[User:Mary Ash|Mary Ash]] 19:56, 30 January 2011 (UTC)
:::For all concerned I removed the talk page comments as advised by an esteemed Citizendium member. Let's be clear about that.[[User:Mary Ash|Mary Ash]] 22:58, 30 January 2011 (UTC)


== My Smog Discussion Page Comments ==
Daniel I just posted this on the Smog talk page. Here's what I posted:


(unindent) First I did offer sources see:
        * EPA Region 9 Owens Valley
        * The Lake Project
        * The Federal Register
        * ABC Australia
        * Where vehicles are not the primary cause of PM10 pollution
        * A picture from the area
They all clearly state the importance of PM 10 air pollution and the man made causes thereof. The only part I was incorrect about was the percentages given by a forest ranger many years ago. As this is an informal discussion, and not sourcing an article, the inclusion of personal information as part of an informal discussion is professional and warranted. Also, I contacted a seasoned CZ contributor about this talk page discussion and was assured that my comments were '''professional''' on my part. I do believe lively discourse and intelligent discussion, even if the viewpoints differ, does much for '''collaboration'''. In fact, I was strongly '''supporting''' the writing of PM 10 by professionals far better informed than I am as I do believe this is an important issue that needs to be written about. I was sincerely trying to '''encourage''' and '''compliment''' those who could do the task. As to my professional credentials when writing about PM 10, I could give a brief non-technical overview as I was educated by the air pollution control board engineers, water board personnel and other environmental personnel during my two years of providing professional coverage of PM 10 and other air pollution matters during my years as an environmental journalist. I am well versed in air pollution and its effects thanks to the many professionals who kindly shared their expertise and time so I could write about these topics.[[User:Mary Ash|Mary Ash]] 03:11, 30 January 2011 (UTC)


add some of the brain papers
:Thanks for the notification. I will not reply there, since you missed my points completely, and this is evident to anyone who actually reads [http://en.citizendium.org/wiki?title=Talk%3ASmog&diff=100751665&oldid=100751587 my post there] with some attention to detail. --[[User:Daniel Mietchen|Daniel Mietchen]] 22:30, 30 January 2011 (UTC)
::Nope. I did not miss your points but I do respectfully disagree with them. I made an attempt to compliment and discuss the authors concerned. I was hoping someone would write an article on PM 10 or add it to the smog article. It seems my comments were misunderstood as I originally commented on the man made events that caused significant and out of compliance PM 10 air pollution in the Owens Valley. Milt seemed to think I was writing about naturally occurring events and I was not. You can not compare naturally occurring PM 10 events to man made PM 10 events. The naturally occurring event will usually produce more PM 10 matter than the man made ones. I was using my personal experiences, and data, as a frame of reference as I do not have the background to comment otherwise. I'd offer the analogy of the old telephone party but that would be an American term and probably misunderstood. Suffice it to state I thoroughly understand the effects of PM 10 air pollution and non-compliance according to the local air quality control board, CARB, local water board officials and the EPA. They all thoroughly tutored me on the subject and I sold many a newspaper for a couple years covering this issue. Or a good journalist is a Jack (or Jill) of all trades but a master of none.[[User:Mary Ash|Mary Ash]] 22:53, 30 January 2011 (UTC)


e.g.
== New user [[User:Joel M. Williams|Joel M. Williams]] ==


G. Gerig, M. Styner, et al. Shape analysis of brain ventricles using SPHARM. In IEEE MMBIA, pages 171–178, 2001.
Daniel, we have a new Chemistry editor. You may wish to post a welcome message on his Talk page. He is also a new physics author as well. [[User:Milton Beychok|Milton Beychok]] 03:07, 14 February 2011 (UTC)
:Thanks for the note, Milt. Done. --[[User:Daniel Mietchen|Daniel Mietchen]] 16:43, 14 February 2011 (UTC)


==OASPA==
Daniel, note 10, the link to [http://poynder.blogspot.com/2010/02/open-access-linked-to-alabama-shooting.html Poynder's blog] about the alabama shooting seems to be a dead link. [[User:Russell D. Jones|Russell D. Jones]] 16:57, 15 February 2011 (UTC)


:Just clicked on it in your post above, and it worked fine. Dunno what the problem was/ is. --[[User:Daniel Mietchen|Daniel Mietchen]] 17:26, 15 February 2011 (UTC)


add SPHARM to external links
== Financial Report as of March 15, 2011 ==


C. Brechbühler, G. Gerig, and O. Kubler. Parametrization of closed surfaces for 3D shape description. Computer Vision and Image Understanding, 61(2):154–170, 1995.
Please read our [[CZ:Donate|Financial Report as of March 15, 2001]] for complete details on our financial history and our current financial situation. If you have any questions, please ask them on [[CZ Talk:Donate]]. [[User:Milton Beychok|Milton Beychok]] 00:12, 18 March 2011 (UTC)
:Thanks for the notification, and for compiling the report in the first place! I had read it already, though. --[[User:Daniel Mietchen|Daniel Mietchen]] 01:10, 18 March 2011 (UTC)


== New Physics and Mathematics author ==


We have a new Physics author, Amin Yazdani, whom you might like to welcome to the project. He is a student at a university in Iran. [[User:Bruce M. Tindall|Bruce M. Tindall]] 14:31, 18 March 2011 (UTC)
:Thanks, Bruce. Done. --[[User:Daniel Mietchen|Daniel Mietchen]] 23:22, 18 March 2011 (UTC)


Shen 2006: "Many graphical models do not have genus-zero surfaces. But using a method described in [24], SPHARM can be extended to process arbitrary manifold meshes."
== Nobel Prize ==


[24] K. Zhou, H. Bao, and J. Shi. 3D surface filtering using spherical harmonics. CAD, 36(4):363–375, 2004.
Hi, Daniel, please take a look at the discussion page at http://en.citizendium.org/wiki/Talk:Nobel_Prize -- Thanks! [[User:Hayford Peirce|Hayford Peirce]] 01:05, 19 March 2011 (UTC)


== New Biology author ==


[[User:James Parker]] is a new Biology author, a student at Edinburgh interested in molecular genetics. [[User:Bruce M. Tindall|Bruce M. Tindall]] 17:29, 21 March 2011 (UTC)
:Thanks - I left him a note. --[[User:Daniel Mietchen|Daniel Mietchen]] 09:46, 22 March 2011 (UTC)


*Penna 2007
== European views about Libya ==


"The standard method for fitting a sphere-like surface to a data set involves (after a possible translation of coordinate axes) writing
[[Operation Odyssey Dawn]] is perhaps not the best place for all activity, but it's something I can keep updated. I am eager to get European views into it -- I know very little, for example, of the German position.  Improvements in the article are welcome, as well as suggestion for reorganizing on a broader set of articles. [[User:Howard C. Berkowitz|Howard C. Berkowitz]] 10:23, 22 March 2011 (UTC)
:The official German position is intentionally not a clear one, since there were elections last Sunday and there will be two more (in other Landers) this Sunday. Military interventions of any kind have very little support amongst German voters. --[[User:Daniel Mietchen|Daniel Mietchen]] 21:16, 22 March 2011 (UTC)


(rho) as a function of the form
==periodic table==
As I was clicking through the periodic tables I noticed there was an improvement, if not fixed. Your recent edits must have been on the right track. [[User:Chris Day|Chris Day]] 16:13, 28 April 2011 (CDT)
:I think it is [http://forum.citizendium.org/index.php/topic,3978.msg42036.html#msg42036 fixed now]. Good to see you back here! --[[User:Daniel Mietchen|Daniel Mietchen]] 16:18, 28 April 2011 (CDT)
::I just checked some more and it is fixed.  Good job. Glad to be back.  I was just wading through some of the forum threads and the governance issues seems a little crazy. But nice to see many familiar faces working hard. I really must try and find more time for this. [[User:Chris Day|Chris Day]] 16:20, 28 April 2011 (CDT)


(3)".
:::Thanks a lot for fixing that template problem, Daniel. And , Chris, it is wonderful to have you back. [[User:Milton Beychok|Milton Beychok]] 16:30, 28 April 2011 (CDT)


"We propose to fit a sphere-like surface to a data set by using functions of the form
==External Links for XML article==
Daniel, I see that you posted a link on the [[XML]] article, in External Links.  I really don't think that this is an ideal external link.  If you're willing, I'll try to find some others, but remove that one.  That link (http://lemire.me/blog/archives/2010/11/17/you-probably-misunderstand-xml/) is a rant by someone who doesn't seem to have a very broad understanding of how XML is used in the world, and his rant is one of those political stances (i.e., the rant against SOAP-XML) that I don't think CZ ought to represent unless the controversy is to be represented in full.  Please let me know if it's OK to replace that link with some more general ones that would help someone get oriented more usefully about XML.[[User:Pat Palmer|Pat Palmer]] 10:47, 1 May 2011 (CDT)


(5)"
:Hi Pat, if you think another link would be an improvement (and I agree that there should be many better ones), then that's what wikis are made for. Surely no need to ask me (a relative newbie in that area) - just go ahead! --[[User:Daniel Mietchen|Daniel Mietchen]] 14:25, 1 May 2011 (CDT)


::Speaking of XML, has anyone programmed an XML-to-MediaWiki converter?  PLoS journals provide for downloading XML versions of articles, some of which CZ could import and develop further.  [[User:Anthony.Sebastian|Anthony.Sebastian]] 21:09, 1 May 2011 (CDT)


:::I have explored this in quite some detail over the last few months. So the general answer is no, but almost (see [http://friendfeed.com/danielmietchen/8107ed57/looking-for-ways-to-convert-xml-into-mediawiki this discussion]), while a specific answer for some kind of XML (which deals with taxonomic treatments) is yes, as shown in [http://species-id.net/wiki/Sinocallipus_catba this article], and discussed more broadly [http://dx.doi.org/10.3897/zookeys.90.1369 here]. However, discussing any application of that here at Citizendium is moot as long as [http://ec.citizendium.org/wiki/EC:PR-2010-013 PR-2010-013] is not amended, as discussed in the following section. --[[User:Daniel Mietchen|Daniel Mietchen]] 13:58, 2 May 2011 (CDT)


"approximating a data set by (5) can produce results no worse than those obtained using spherical harmonics."
== Re: http://en.citizendium.org/wiki/User:Daniel_Mietchen/PR-2010-013#Revised_phrasing_.285.29 ==


Appendix at http://computer.org/tpami/archives.htm
Daniel, as you know, five rephrasings of your original, now on http://en.citizendium.org/wiki/User:Daniel_Mietchen/PR-2010-013#Revised_phrasing_.285.29.  Should you consolidate, submit as ''new'' proposal?  What can I do to help?  [[User:Anthony.Sebastian|Anthony.Sebastian]] 21:04, 1 May 2011 (CDT)


:It's probably time to submit it in some new form, yes. But for me, there are other important things to consider, e.g. [[CZ:Managing Editor/2010/008 - Modifications to the Charter|Modifications to the Charter]]. Will see how we can move forward on these fronts, and any help and suggestion is welcome. --[[User:Daniel Mietchen|Daniel Mietchen]] 14:02, 2 May 2011 (CDT)


::What do you think of using some BMC Q&A paper to test the waters? For instance, [http://www.biomedcentral.com/1741-7007/9/20 Who is H. sapiens really, and how do we know?] could be used to beef up [[Homo sapiens]], [[Human evolution]], [[DNA]], [[DNA sequencing]] and some related articles. --[[User:Daniel Mietchen|Daniel Mietchen]] 16:00, 2 May 2011 (CDT)


Shen 2006:


"The spherical harmonic expansion described above is essentially the Fourier transform for functions defined on the sphere; and it  transfers spherical scalar signals into its frequency spectrum."
== Press page ==


"Since spherical harmonics form a complete set of orthonormal basis functions with a coarse-to-fine hierarchy, using more coefficients leads to a more accurate reconstruction."
This http://en.citizendium.org/wiki/CZ:Press appears as number 2 on a google search. Obviously, it needs you as a contact (and some other updating maybe. [[User:Martin Baldwin-Edwards|Martin Baldwin-Edwards]] 20:40, 2 May 2011 (CDT)


:Yes. Thanks. Updated it a bit. --[[User:Daniel Mietchen|Daniel Mietchen]] 06:28, 3 May 2011 (CDT)


== What do you think of [[Los Alamos National Laboratory]]? ==


Kugelfunktionen:
Daniel, I think that [[Los Alamos National Laboratory]] is ready to be nominated for approval. Would you consider nominating it? [[User:Milton Beychok|Milton Beychok]] 06:00, 14 June 2011 (UTC)


Lindner (Grundkurs Theoretische Physik, Teubner 1997) writes:
:Hi Milt, I read most of it and concur that it is in a good state. However, I will not nominate it, as I do not have relevant expertise. --[[User:Daniel Mietchen|Daniel Mietchen]] 02:47, 21 June 2011 (UTC)


"4.3.9 Kugelfunktionen<br>
== Criteria for becoming a Health Sciences Editor ==


Sie sind die Ortsdarstellung der Bahndrehimpulseigenzustände |l,m>. Allerdings kommt es nicht auf den Betrag des Ortsvektors an, sondern nur auf die Richtung (footnote: Einige bevorzugen daher den Namen Kugel''flächen''funktionen, der mir aber zu umständlich vorkommt - wir sprechen ja auch von Kugelsymmetrie)."
Dear Daniel,
I read the matter at http://ec.citizendium.org/wiki/EC:PR-2010-017/Healing_Arts_workgroup,
which states, "Healing Arts Editors that are currently licensed to practice their discipline shall be accepted as Health Sciences Editors".
May I ask you, as the CZ Managing Editor, how CZ verifies that a person is licensed - is it his/her Registration Certificate or his name being mentioned on his/her College web-site?&mdash;[[User:Ramanand Jhingade|Ramanand Jhingade]] 18:03, 16 June 2011 (UTC)


:I would assume this verification to be a task for the [[:Category:CZ Editorial Personnel Administrators|EPA]]. --[[User:Daniel Mietchen|Daniel Mietchen]] 02:53, 21 June 2011 (UTC)


== New Physics author named [[User:Jim Earl|Jim Earl]] ==


==={{pl|Syrinx}}===
Hi, Daniel: We have a new Physics author named [[User:Jim Earl|Jim Earl]]. Please visit his Talk page and leave him a welcome message. Regards, [[User:Milton Beychok|Milton Beychok]] 08:02, 29 June 2011 (UTC)


veney 2005 syrinx.pdf :
== Funding for continuation of Citizendium ==


"The song system of zebra finches is highly sexually dimorphic (Nottebohm and Arnold 1976). Many features of this circuit, from the forebrain nuclei involved in coordinating motor patterns to the vocal organ in the throat critical for sound production (syrinx), are
Daniel: Undoubtedly you have been thinking about ways to secure funding to continue CZ. Can you give us any encouraging progress reports?  As ME, you have charter authority to contact outside sources for relations with CZ.


enhanced in males compared to females (reviewed in Arnold 1997; Wade 2001; Balthazart and Adkins-Regan 2002). In the forebrain, the volume of song control regions is larger in males than in females, which results from males having larger and more numerous neurons
Have you put heads together with Larry on this issue?


with more extensive dendritic arborization (reviewed in Arnold 1992). The syrinx, which has been studied much less, is located at the junction of the trachea and the two bronchi and consists of closely spaced cartilage rings enveloped by several bilaterally paired muscles. The largest of these muscles are the ventralis and dorsalis, which together with the others, control the movement of
Microsoft tried an Encyclopedia, then gave up.  Perhaps they would like to participate in CZ. Funding-wise, partnering, making Encarta content available for updating, notifying their contributors about CZ.


the syrinx and modulate the flow of air in a manner that in males results in the stereotyped vocalizations typical of song (King 1989; Suthers 1997; Goller and Larsen 2002; Larsen and Goller 2002)."
Microsoft needs a much bigger toehold in the academic world.


I know you have many other passions besides CZ.  How does CZ fit into your agenda?  How do you see CZ's medium-term future?


Will you, as ME, speak to us on these issues?  [[User:Anthony.Sebastian|Anthony.Sebastian]] 19:20, 6 August 2011 (UTC)


:It is entirely possible that Daniel will have an insight into the financial situation, I would also be interested to know his thoughts on the matter.


:As far as his having responsibility for relations outside of CZ, you will also know that Cherter specifies that while the ME should ''represent the Citizendium in its relations with external bodies'' it is the MC who shall ''make all the financial and legal decisions for the Citizendium''.


==={{pl|Vocal learning}}===
:Since Larry is already part of the MC, and has indicated that he believes CZ shall not come to an untimely end due to finances alone, it might be more appropriate to ask the MC directly. Notwithstanding the fact that Daniel may well have been active on this issue, it is clearly one of responsibility for the MC, and Daniel would (I believe) only be representing the MCs wishes to outside authorities should he be discussing finances with them.


"Names" in spectacled parrotlets, Forpus conspicillatus (Wanker 2005) and in Tursiops (Janik papers)
:As to how CZ, or his role as ME, fits with Daniels agenda I of course have no clue. If your question was a personal one then excuse my intrusion - if your question was how his personal circumstances are affecting his role as ME then I think that a question best asked of all elected officials, for whom election carried some responsibility. I can assure you, however, that similar questions to Council members have found an unwelcome audience in the past.


:You are correct that we have heard little about potential financial solutions, beyond paying for it ourselves. Really it is the MCs job to work out the finances, and while the outside world may need a go-between to explain the MCs position, here at CZ maybe we could all manage with just hearing what the MC are doing about it? Say, on the forum?


:And as far as CZs any-term future goes, the [[CZ:Statistics#Daily contributors|statistics page]] will give you an idea of what direction CZ is heading in. CZ has been accused of being a "vanity site", alternatively a "hobby site", where a handful of members pay to have a space they can publish in, but that no-one will ever visit, much less use for encyclopedic purposes. Reversing that trend is likely to not be a purely financial consideration. [[User:David Finn|David Finn]] 09:37, 7 August 2011 (UTC)
{{Image|Average CZ edits per day.PNG|right|250px|Page edits from [[CZ:Statistics|statistics page]] with superposed trend lines. Crisis points?}}
::The figure at right shows some very broad trends. I wonder whether anyone at CZ has made an analysis of what has happened? If the trendlines are accepted there are three epochs: (i) Initial epoch of increasing activity ending mid 2008. This period ended with some catastrophic event that seems to be very tightly associated with mid-2008. (ii) Second growth period ending late 2009. This period ended with another catastrophic event and a short period of equilibration following it. (iii) Third period of steady decline, projected to end CZ altogether by late 2011.
::What assessment has been made as to the origins and demise of the two golden ages and why has a third rebound not occurred? [[User:John R. Brews|John R. Brews]] 14:34, 7 August 2011 (UTC)
:The graphs on the [[CZ:Statistics#Daily contributors|statistics page]] do not show discontinuities in number of editors, although there has been a slow decline from the values in 2007-2008. The discontinuities in activity appear to be more related to activity of these authors on CZ. They became suddenly disillusioned? The really active authors left, leaving behind those not so productive? [[User:John R. Brews|John R. Brews]] 15:01, 7 August 2011 (UTC)


on candidate genes:
::Data points?
::*[[User:Howard C. Berkowitz]] joined the project May 1, 2008.
::*[[User:Larry Sanger]] drastically curtailed activity after March 19 2009.
::[[User:D. Matt Innis|D. Matt Innis]] 16:30, 7 August 2011 (UTC)


::More points?
::*Charter drafting process begins October 2009.
::[[User:D. Matt Innis|D. Matt Innis]] 16:34, 7 August 2011 (UTC)


←(Out-dent)<br>
John, thanks for following up on my query to Daniel re funding for CZ.  I agree with the points you make.


#candidate processes
Re: "As far as his having responsibility for relations outside of CZ, you will also know that Cherter specifies that while the ME should represent the Citizendium in its relations with external bodies it is the MC who shall make all the financial and legal decisions for the Citizendium."


-see also Fig. 6A & C in Spiteri 2007 & Tab. 3 in Vernes 2007
Yes. However, that doesn't mean that Daniel, in representing CZ in relating outside CZ, cannot explore funding opportunities in conjunction with exploring partnering in the broadest sense of the term. Certainly, the MC will make decisions in those matters, though the ME has additional discretionary powers/obligations that might bear on this issue.


Certainly, if I knew a 'philantropist', potential large CZ donor, I'd want to receive advice from the MC what they want for the next steps.  The MC might decide to investigate and set terms and render decisions, but they might not want to spoil any special relation I already have.


Matt, I thought of starting a forum topic saluting CZ's most prolific content contributers.  What do you think? Perhaps a better way to highlight them, especially if that better way stimulated the less prolific to want to make the 'Dean's List', so to speak.  [[User:Anthony.Sebastian|Anthony.Sebastian]] 19:34, 7 August 2011 (UTC) [sig added]


Teramitsu 2008 cites
:Anthony, I think that is ''exactly'' the kind of thing we need - especially if it included links to articles that have red links that need further developing ;-) [[User:D. Matt Innis|D. Matt Innis]] 20:25, 7 August 2011 (UTC)


Webb 2005: "FoxP2 in song-learning birds and vocal-learning mammals" at http://jhered.oxfordjournals.org/cgi/content/abstract/96/3/212 .
::I think this thread is something for the Forums, where I will respond as soon as I get a decent internet connection. As for the graph, I can't pinpoint what is behind the plunge in 2008 but the two other spikes are due to bot activity being stopped (September 2009) and briefly resumed (January 2010). --[[User:Daniel Mietchen|Daniel Mietchen]] 21:20, 7 August 2011 (UTC)


:::My reply is [http://forum.citizendium.org/index.php?topic=4086.msg43820#msg43820 here]. As for opening up a thread to thank people, I don't think we need another forum thread, and the best way to thank people for their work on articles is generally to improve some of those articles. --[[User:Daniel Mietchen|Daniel Mietchen]] 02:47, 8 August 2011 (UTC)
==Average edits==
{{Image|Average CZ edits per day.PNG|right|250px|Average edits}}
Daniel: A plausible explanation for the first discontinuity in this chart in 2008 is a sudden discontinuation of activity (for example the departure of a number of contributors), which removes a constant from the edit rate, causing an immediate downward step in Sept 2008. Casual observation in the science and math areas shows that there were indeed a number of withdrawals at this time. A departure naturally leads to a downward step, followed by a continuation of the same steady rise seen before that. The second drop, in 2009 may have the same cause,possibly augmented by a stop in bot activity, but the downward step is not followed by a continuation of the rise seen before the step, as expected from a step drop in activity.


And of course the steady subsequent decline is serious and unaccounted for. Without the brief bot resumption arresting this fall, causing a momentary flat plateau, the steady drop in editing activity would commence earlier, immediately after the second step drop. The onset of the present-day steady drop then would correlate with the event causing the second drop.


and
The steady decline seems to suggest the drop in activity is an ongoing phenomenon, as removal of one or more contributors would cause only a step down in edits upon withdrawal, not a continuing drop. Apparently CZ is seeing a net steady loss of contributors as time progresses.  
 
Li, G., Wang, J., Rossiter, S.J., Jones, G., and Zhang, S. (2007). Accelerated FoxP2 evolution in echolocating bats. PLoS ONE 2, e900.
 
 
 
Hall 2007 cites
 
Remaine, A., 1962. Gedanken zum Problem: Homologie und Analogie, Preadaptation und Parallelitat. Zool. Anz. 166, 447e465.
 
 
 
Pereira 2006 gives molecular divergence as 305-342mybp
 
see also Benton 2000 (as cited by Blair 2005)
 
 
 
read campbell 2002
 
 
 
 
 
 
 
Ramus 2006: "The necessary genetic pre-wiring of linguistic modules with
 
highly speciWc computational properties and connectivity could be obtained through
 
the joint eVects of (1) genes generally implicated in brain development processes (like
 
the neural migration genes just discussed) (2) genes with speciWc anatomical expressions
 
that would interact with the former, and (3) transcription factors that would
 
orchestrate the expression of the former two, so that they would be expressed at speciWc
 
times, in speciWc combinations and in speciWc areas so as to produce unique anatomical
 
structures with unique computational and representational properties.
 
Although the third category of genes might include language-speciWc genes (triggering
 
developmental cascades relevant only to linguistic modules), they might also have
 
other regulating functions elsewhere in the brain or in the rest of the body. As seems
 
to be the case with the FOXP2 gene (see Fisher), such functions could be shared with
 
other species, with only one or two recent mutations possibly allowing the protein to
 
perform an additional regulatory function without compromising earlier ones. Such
 
may be the reality about the genetics of language."
 
 
 
 
 
paper by Balaban in Cognition 101, 2006 (cited by ramus):
 
Evan Balaban goes on with a bird’s eye view of the multiple factors that influence
 
brain development, which explain why causal relationships from gene to cognition are
 
highly degraded. His paper covers further discussion of what FOXP2 may or may not
 
do, biological determinants of critical periods, experience and brain plasticity, and the
 
important but often overlooked role of stochastic factors in brain development. He
 
advocates greater integration between biological data and cognitivist theorising.
 
 
 
To T: Read Ramus 2006, at least section 5:Developmental dyslexia and the future of language genetics
 
Ramus 2006:
 
"Until recently, linkage studies had provided six reliable chromosomal loci suspected
 
to harbour genes associated with dyslexia (Grigorenko, 2003). Now four such
 
genes have been identiWed in some of these loci: DYX1C1 on 15q21 (Taipale et al.,
 
2003), KIAA0319 on 6p22 (Cope et al., 2005; Francks et al., 2004), DCDC2 just a few
 
markers away on 6p22 (Meng et al., 2005; Schumacher et al., 2005), and ROBO1 on
 
3p12 (Hannula-Jouppi et al., 2005). If it were not exciting enough to discover four
 
dyslexia genes in two years, functional studies of these genes have provided remarkably
 
converging evidence.
 
LoTurco and colleagues have used a particularly innovative technique to study
 
the role of three of these genes in brain development (Bai et al., 2003). They have produced
 
“functional knock-out” rats using in vivo RNA interference. This technique
 
allowed them to speciWcally block the translation of the gene of interest, in vivo,
 
locally, and at a chosen stage of development (indeed, in utero during neural migration).
 
Using this technique, they showed that DYX1C1 is involved in radial neural
 
migration, and that the part of the protein that is truncated in a Finnish dyslexic family
 
(Taipale et al., 2003) is necessary and suYcient for normal neural migration
 
(Wang et al., submitted for publication). They have further shown that cortical ectopias
 
(like the ones observed in dyslexic brains) sometimes occur as a result of the
 
DYX1C1-induced disruption of neural migration. The same team has been able to
 
conduct similar studies on both DCDC2 (Meng et al., 2005) and KIAA0319 (Paracchini
 
et al., 2006), again concluding that these genes are crucially implicated in neural
 
migration. Finally, ROBO1 is a homologue of a well-known drosophila gene that is
 
involved in inter-hemispheric axon guidance and cortical dendritic guidance (Hannula-
 
Jouppi et al., 2005).
 
Amusingly, these Wndings oVer a striking parallel with Galaburda’s original discovery
 
of the Wrst four brains with neural migration anomalies. Now there are four
 
candidate genes for dyslexia, and all four are involved in neural migration or guidance.
 
How likely is that to occur by chance?
 
-->Perhaps the hypothesis that dyslexia is a
 
neural migration disorder should be taken seriously at last.
 
 
 
 
 
"This suggests that other genes remain to be found, whose expression
 
in the cortex is anatomically restricted, and that interact with neural migration
 
genes in such a way as to spatially constrain the eVects of risk alleles. As I have mentioned
 
earlier, there are plenty such genes, the latest search yielding 349 (Gray et al.,
 
2004)."
 
 
 
add Kuypers, 1958/ Jürgens, 1998.
 
=Talk space=
 
==Archives==
{{Archive box|auto=long}}
 
==Thanks==
Will do.[[User:Gareth Leng|Gareth Leng]] 17:06, 22 January 2009 (UTC)


== Re: your note on my talk page ==
I suspect the exodus in 2008 was not adequately addressed to find its causes, and a another, apparently more substantial crisis occurred in 2009, and is again being ignored. Whatever the underlying dissatisfaction, this time the impact is more serious. It undoubtedly is compounded by the financial situation, but I don't think that is everything. [[User:John R. Brews|John R. Brews]] 15:46, 11 August 2011 (UTC)


I do not think that it is necessary for me to become an editor as far as approval of the NMR spectroscopy article is concerned, as it is clear that there are three well qualified editors - D.E.Volk, Paul Wormer and yourself.  Also, we are in the middle of our semester now; our vacation starts in May and hopefully this article will be approved by then - at that time (in May) I can apply to be an editor.
:I can't add much to what I already stated above - "I can't pinpoint what is behind the plunge in 2008 but the two other spikes are due to bot activity being stopped (September 2009) and briefly resumed (January 2010)" - except that (1) I think you underestimate the bot contributions to the 2009 and 2010 spikes, (2) the rising flank of the 2008 plunge had a bot component as well and (3) a number of prolific contributors left in 2008, or at least reduced their activity here, but having just joined in myself then, I am not sure of any specific event(s) that catalyzed the drop. To find out more, it's perhaps necessary to dig around the forums or email archives. --[[User:Daniel Mietchen|Daniel Mietchen]] 21:51, 15 August 2011 (UTC)
  Thanks for the invitation. [[User:Sekhar Talluri|Sekhar Talluri]] 17:19, 22 January 2009 (UTC)


== Please note my post at [[Talk:AN-]] about final approval tomorrow ==
== Applied Consciousness Sciences ==


Daniel, just notifying you about my post at [[Talk:AN-]] regarding final approval tomorrow of [[AN-]]. Regards, [[User:Milton Beychok|Milton Beychok]] 05:52, 28 January 2009 (UTC)
Hi Daniel:  See [http://en.citizendium.org/wiki/User_talk:D._Matt_Innis#Article_deletion:_can_literally_any_article_survive_on_CZ_today.3F this discussion] that indicates Matt is awaiting some more definitive action from a psychology editor before taking any action in deleting [[Applied Consciousness Sciences]].  As indicated on the talk page [http://en.citizendium.org/wiki/Talk:Applied_Consciousness_Sciences#This_article_should_be_deleted here] and possibly [http://en.citizendium.org/wiki/Talk:Applied_Consciousness_Sciences#Is_this_article_totally_hopeless.3F here] there is reason to proceed. The [http://en.citizendium.org/wiki/Special:Contributions/Carlo_Monsanto author of this article] appears to have no great interest in responding to these remarks.   [[User:John R. Brews|John R. Brews]] 21:57, 9 October 2011 (UTC)


== Any plans for these? ==
:The main problem for me to place the deletion template is that there have been so many modifications to the Editor's role recently, and they are not easy to find (e.g. none of them are linked from the Charter), so I am not entirely sure what the exact procedure is. Will take another look. Pointers appreciated. --[[User:Daniel Mietchen|Daniel Mietchen]] 15:05, 10 October 2011 (UTC)


I can't tell if these are lost or whether they are going to be part of articles? No big deal but just not sure what to do with them in their orphaned state.
== Old Banner Still showing ==
*[[Self-replication/Bibliography]]
*[[Skeleton/Bibliography]]
*[[Genome/Bibliography]]
*[[Environment_%28biology%29/Bibliography]]
*[[Cerebellum/Bibliography]]
*[[Computational_biology/Video]]
*[[Single-nucleotide_polymorphism/Bibliography]]
*[[Whistling/Bibliography]]
*[[Transcranial_magnetic_stimulation/Bibliography]]
[[User:Chris Day|Chris Day]] 06:04, 29 January 2009 (UTC)


:Thanks for pointing them out to me - how can I keep track of such lost pages via a single category or special page? I normally create a stub for the articles on which I collect references here but sometime the server is too slow to really go through the whole page creation process. So these ones are back on my list now, and I will create those articles during the next week or so. --[[User:Daniel Mietchen|Daniel Mietchen]] 09:55, 29 January 2009 (UTC)
Daniel, for non-logged-in users the banner announcing the call for nominations and elections back in June 2011 is still showing. [[User:Russell D. Jones|Russell D. Jones]] 16:14, 2 November 2011 (UTC)


::This category should have most of them ([[:Category:Orphan subpage]]).  Note though that many listed in there will be "fossil" pages, ones that had the template but do not any longer.  This is one of the problems with adding categories with the subpages template.  While the categories on each page are always current the presence of an article on a category page depends on a recent edit; the categories don't register correctly unless there is an edit to the page.  Thus, the list of articles in any category can become outdated quite fast if pages remain unedited.  It's a real pain and makes categories somewhat problematic for maintenance tasks. [[User:Chris Day|Chris Day]] 16:17, 30 January 2009 (UTC)
:Banners often seem to be out of date, and varying between pages. [[User:Peter Jackson|Peter Jackson]] 11:18, 3 November 2011 (UTC)


== Please note my posting on [[Talk:Concentration (chemistry)]] ==
::I had an occasional look at that over the last few days and didn't find any such wrong banners. But I know they do occur whenever we meddle with SiteNotice, and as far as I remember, this is due to caching. No idea about the deeper workings, though. --[[User:Daniel Mietchen|Daniel Mietchen]] 15:57, 7 November 2011 (UTC)


Daniel, I would very much appreciate a response to my posting at [[Talk:Concentration (chemistry)]]. Thanks in advance, [[User:Milton Beychok|Milton Beychok]] 19:17, 30 January 2009 (UTC)
== Draft approved which shouldn't be ==


== Kugelfunktionen ==
[[Alcmaeon/Draft]]: This page has somehow has "approved" status, but it's a "draft" page and shouldn't be at the approved stage.  The [[Alcmaeon]] article is approved.  [[User:Russell D. Jones|Russell D. Jones]] 21:28, 21 November 2011 (UTC)
:I just looked at it, Russell, and it looks OK to me -- just a draft article.... What am I missing? [[User:Hayford Peirce|Hayford Peirce]] 23:49, 21 November 2011 (UTC)
::The top banner clearly states "post-approval draft version", which seems to be correct. --[[User:Daniel Mietchen|Daniel Mietchen]] 00:17, 22 November 2011 (UTC)
:::So why don't other [[:Category:History_Approved|approved articles]] have approved draft pages?  [[User:Russell D. Jones|Russell D. Jones]] 14:07, 22 November 2011 (UTC)
::::Now I see what you mean - it is not that this draft page is approved, but that it is the only draft page listed in that category. That surely is a mistake and should be fixed. Will check. --[[User:Daniel Mietchen|Daniel Mietchen]] 14:19, 22 November 2011 (UTC)
:::::[http://en.citizendium.org/wiki?title=Template:Alcmaeon/Metadata&diff=prev&oldid=100790877 Fixed]. Thanks for the hint and for insisting. --[[User:Daniel Mietchen|Daniel Mietchen]] 14:25, 22 November 2011 (UTC)


Daniel, I know that WP.de calls these functions ''Kugelflächenfunktionen'', but I have here Courant-Hilbert, ''Methoden der mathematischen Physik'', Band I (Heidelberger Taschenbücher 1968). On p. 270 we find the ''Schwingungsgleichung'' with solution ''Ansatz'' ''u''(''r'')''Y''(&theta;, &phi;). Then a few lines down: ''nur für die Werte k = n(n+1) genügt werden kann, und zwar durch die Kugelfunktionen Y<sub>n</sub>(&theta;, &phi;)''. The term ''Kugelflächenfunktion'' appears once (p. 274) in Courant-Hilbert (and ''Kugelfunktion'' very often), and this ''flächenfunktion''  is on a ''beliebiges Gebiet auf der Kugeloberfläche''  (not on the whole surface).  In addition, I own  a German translation of Edmonds:  ''Drehimpulse in der Quantenmechanik'' (Hochschultaschenbücher 1964) where on p. 31: ''Die Y<sub>lm</sub> sind somit die Kugelfunktionen''. --[[User:Paul Wormer|Paul Wormer]] 08:47, 5 February 2009 (UTC)
== Infobox template for planets ==


:I had not checked WP on this one but I know both terms are in use, even though most references I read on them were in Engels. In a German phrase, one could indicate the existence of the two terms by writing "Kugel(flächen)funktionen" but this would probably be irritating here. So I changed it into the one that I think is more specific (there are other, though rarer, uses of "Kugelfunktion") and more frequently used in this context. If you're not satisfied by that, I would suggest to use the term employed in the German translation of Landau/Lifshitz (don't have it at hand but could drop in to a library somewhen during the next few days). --[[User:Daniel Mietchen|Daniel Mietchen]] 17:35, 5 February 2009 (UTC)
It appears that the parameters which are shown in the Tables on the page for the planet [[Uranus (planet)|Uranus]] are the ones we should be using in the infobox for the planets. These are somewhat different than those for the dwarf planets so we can't use the same infobox for both. I have presented the parameters in two separate tables, but that procedure need not (should not?) be followed. Ideally, the infobox would tuck in just below the top image, or maybe the image could be the top-most element in the infobox. The only possible addition I could suggest for the parameters is the inclusion of the astronomical / astrological symbol.  


::Why would a translation of Landau-Lifschitz be better than the German of two famous Göttinger mathematicians, Courant and Hilbert? Their book was the Bible for all early quantum mechaniciens, including Landau no doubt. The book has an enormous prestige, for a large part due to Hilbert's prestige of course. Anyway, I would be surprised if the translator of Landau-Lifschitz would not use ''Kugelfunktion''. In any case the translator of Edmonds uses it.
Anyway, if you could devise the infobox, your help would be much appreciated. After it is ready, I will fill in the information and put them up on the articles for the respective planets.
::I looked at yet another German book (H. Teichmann, Vektor und Tensorrechnung) and Teichmann uses ''Kugelfunktion'' for what I would call [[solid harmonics|irregular solid harmonic]] (power r<sup>L+1</sup> in the denominator) and indeed Kugelflächefunktion for spherical harmonics.--[[User:Paul Wormer|Paul Wormer]] 18:01, 5 February 2009 (UTC)


:::I do not feel competent to judge whether any of the two books is "better", since I only know one of them. Anyway, I'm in the library right now. Kugelfunktionen is used in Landau/Lifschitz (Band 3, Quantenmechanik) and five of the six other quantum mechanics text books available here (the exception being the translation of Cohen-Tannoudji/Diu/Laloë). Math books (checked about a dozen) usually give both terms, redirecting Kugelflächenfunktionen to Kugelfunktionen. The latter term seems to be used in several contexts, e.g. Kugelflächenfunktionen vs. räumliche Kugelfunktionen. However, such fine distinctions are probably not relevant to our article in question, and so I have changed it back to Kugelfunktionen. Thanks for checking! Groetjes --[[User:Daniel Mietchen|Daniel Mietchen]] 19:36, 6 February 2009 (UTC)
[[User:James F. Perry|James F. Perry]] 18:19, 28 November 2011 (UTC)


== Clerk Maxwell ==
:OK, will do. --[[User:Daniel Mietchen|Daniel Mietchen]] 10:09, 29 November 2011 (UTC)


Daniel, Would you be willing to co-nominate for approval [[James Clerk Maxwell]]?  We're in a pickle over there.  I've nominated the article for approval, but we need a physicist to check-off on the physics section of the article.  --[[User:Russell D. Jones|Russell D. Jones]] 00:57, 15 February 2009 (UTC)
== Final draft Interview Correio Braziliense ==
:Will go through it before Feb 29. --[[User:Daniel Mietchen|Daniel Mietchen]] 11:12, 15 February 2009 (UTC)


== disambiguation ==
Hi Daniel:


Daniel, Just a heads up. I wanted to simplify the R template so i removed the ''disambiguation status'' functionality.  It now has its own template at {{tl|RD}}.  I made the required changes at [[CZ:List of words with multiple uses]] but you maybe using it somewhere else?  [[User:Chris Day|Chris Day]] 17:55, 25 February 2009 (UTC)
I made some further changes before I noticed you were cutting off further changes.
:Thanks for continuing to work on that and to "drive" the proposal. I don't see problems with this split, and I haven't used the R template for disambiguations elsewhere. --[[User:Daniel Mietchen|Daniel Mietchen]] 17:54, 27 February 2009 (UTC)
I hope they can be incorporated.


== example microbe ==
[[User:John R. Brews|John R. Brews]] 18:04, 13 January 2012 (UTC)
This page is just a temporary place holder for the template for my eduzendium class. I will delete it later.
Cheers JD --[[User:John J. Dennehy|John J. Dennehy]] 15:33, 4 March 2009 (UTC)
:I understand that but thought it would be better to put as much redundant information (namely the EZ template) into this copy-and-paste source as possible. Besides, if the article is in the CZ namespace, it can serve as a template for future classes without hindering anything in main space. --[[User:Daniel Mietchen|Daniel Mietchen]] 15:40, 4 March 2009 (UTC)
::Daniel, how do you edit  <nowiki>{{CZ:Biol_201:_General_Microbiology/EZnotice}}</nowiki> ?[[User:John J. Dennehy|John J. Dennehy]] 14:29, 11 March 2009 (UTC)
:::via [[CZ:Biol_201:_General_Microbiology/EZnotice]]. --[[User:Daniel Mietchen|Daniel Mietchen]] 14:32, 11 March 2009 (UTC)


== hyperlink from redirect info ==
:No worries. Forwarded the latest edits too. --[[User:Daniel Mietchen|Daniel Mietchen]] 03:33, 14 January 2012 (UTC)


Nothing springs to mind but let me think some more.  Is the reason for the redirect to have a more user friendly description, rather than the unambiguous DOI, so it is easier to identify the references in edit mode? [[User:Chris Day|Chris Day]] 15:24, 11 March 2009 (UTC)
::Daniel: What is known about the point of this exercise for Correio? I think it was a good exercise for CZ in causing a bit of thought about the project. [[User:John R. Brews|John R. Brews]] 18:42, 14 January 2012 (UTC)
:Yes, edit mode really requires something human-readable, and most DOIs do not meet this criterion. --[[User:Daniel Mietchen|Daniel Mietchen]] 15:27, 11 March 2009 (UTC)
::I agree. [[User:Chris Day|Chris Day]] 15:36, 11 March 2009 (UTC)
Good news, I added it to the [http://en.citizendium.org/wiki?title=Template%3ACitation&diff=100462232&oldid=100144153 citation template] directly.  Let me know if you want more details. Unfortunately, with this solution, the edit link has to be at the end of the reference itself rather than the end of the comment. [[User:Chris Day|Chris Day]] 16:09, 11 March 2009 (UTC)


== level vs statusbar ==
:::No response from their end yet, but the expected date of posting was somewhere around next week. --[[User:Daniel Mietchen|Daniel Mietchen]] 10:43, 16 January 2012 (UTC)


Here is the [http://en.citizendium.org/wiki?title=Template%3ASubpage_style&diff=100462995&oldid=100462946 correct edit].  Let me know what you think.  Might need more tweaking. [[User:Chris Day|Chris Day]] 15:42, 13 March 2009 (UTC)
== Update ==
:And yes, image map would be a good idea. [[User:Chris Day|Chris Day]] 15:43, 13 March 2009 (UTC)
::I was aware of this way to do it but it did not include the
:::<nowiki>{{#ifeq: 0 | {{{{{1|}}}/Metadata|info=status}}|Approved Article|}}{{#ifeq: 1 | {{{{{1|}}}/Metadata|info=status}}|Developed Article|}}{{#ifeq: 2 | {{{{{1|}}}/Metadata|info=status}}|Developing Article|}}{{#ifeq: 3 | {{{{{1|}}}/Metadata|info=status}}|Stub|}}{{#ifeq: 4 | {{{{{1|}}}/Metadata|info=status}}|External Article|}</nowiki>
::part used to explain the images. I do not know how to resize images anisotropically but think it would be appropriate (if it exists) here. I might give imagemap a try . --[[User:Daniel Mietchen|Daniel Mietchen]] 16:13, 13 March 2009 (UTC)
:::OK, Now I understand what you were up to, i didn't notice the mouseable text (not sure what the official name is). I seem to remember that not working for me before.  If you want to play around a bit you can try the [[test article]] with {{tl|Subpage style test}}.  That way it will not be a drain on the server. [[User:Chris Day|Chris Day]] 16:27, 13 March 2009 (UTC)


As to the code it should be the following.
You forgot to change where it says you're the Managing Editor. [[User:Peter Jackson|Peter Jackson]] 17:52, 27 November 2014 (UTC)
<nowiki>{{#ifeq: 0 |{{{status}}}|Approved Article|}}{{#ifeq: 1 |{{{status|}}}|Developed Article|}}{{#ifeq: 2 | {{{status|}}}|Developing Article|}}{{#ifeq: 3 | {{{status|}}}|Stub|}}{{#ifeq: 4 | {{{status|}}}|External Article|}</nowiki>
All the parameters for the subpage style template are set by the previous template in the series.  For example, see {{tl|Parameters1}}.  [[User:Chris Day|Chris Day]] 16:33, 13 March 2009 (UTC)
:Done. Anisotropic image scaling may still have to be helpful, though, at least for non-zero status. --[[User:Daniel Mietchen|Daniel Mietchen]] 17:43, 13 March 2009 (UTC)
::What is the relation between an edit to a page (or heavily used template) and server load or lag? --[[User:Daniel Mietchen|Daniel Mietchen]] 18:05, 13 March 2009 (UTC)
:::Just read [http://www.mediawiki.org/wiki/Manual:Job_queue http://www.mediawiki.org/wiki/Manual:Job_queue] and think it would be better to protect {{tl|subpages}} and the associated templates. --[[User:Daniel Mietchen|Daniel Mietchen]] 18:22, 13 March 2009 (UTC)
::::Is there not a cascading protection already? [[User:Chris Day|Chris Day]] 19:36, 13 March 2009 (UTC)
::::I just checked again and it is protected with cascading protection.  In theory you should only be able to edit {{tl|subpage style}} with sysop rights. Maybe you have them without knowing? [[User:Chris Day|Chris Day]] 19:46, 13 March 2009 (UTC)

Latest revision as of 08:51, 20 March 2024

Hourglass drawing.svg Where Daniel lives it is approximately: 15:24


Archives



Bot request - jogging Category:Pages with too many expensive parser function calls

Daniel, please could you see my post on the forums at this link. My experience in programming Bots is precisely zero, so I could use the opinion (and perhaps programming skills if you have the time) of someone with an interest in this area. --Chris Key 17:12, 4 June 2010 (UTC)

I think
python add_text.py -cat:Pages_with_too_many_expensive_parser_function_calls -text:" " -summary:"Test edit:Category jog for [[:Category:Pages with too many expensive parser function calls]]."
will add a space at the end of each page in that category and should do the trick.
Can't test this right now, as I am traveling, but getting the permission to run this script will take time anyway — can you arrange for that? Will try to do the test edits when I get a stable internet connection, but this won't be before tomorrow night. --Daniel Mietchen 19:19, 4 June 2010 (UTC)
Thanks Daniel. I'll do what I can to get approval (pending successful test edits) by the time you have a stable connection. Safe travels. --Chris Key 19:50, 4 June 2010 (UTC)
We have permission from Dan Nessett to perform test edits on the test wiki only (not the live wiki). Once these are done we need to get further permission from Matt Innis. We must ensure that the bot only does a null edit, and then as long as me, you and Dan are satisfied I believe that Matt will give approval as he has already looked at the discussion (see his comments). --Chris Key 21:30, 4 June 2010 (UTC)
I have made a Bot request. Please ensure that the summary of the bot reads is Category jog for [[:Category:Pages with too many expensive parser function calls|Pages with too many expensive parser function calls]]. [[CZ:Bot status/ExpensiveParserJog/Feedback|Give feedback.]] --Chris Key 23:02, 4 June 2010 (UTC)
OK. --Daniel Mietchen 17:44, 5 June 2010 (UTC)

About our new Psychology Editor

Hi, Daniel:

John Calvin Moore joined us as a Psychology Editor yesterday and has already dipped his toes into the water by editing the Abnormal psychology article. As the only other active Psychology Editor that I am aware of, would you be so kind as to introduce yourself to him and perhaps assist him in learning the ropes about clusters, subpages and so forth? Regards, Milton Beychok 22:19, 17 June 2010 (UTC)

Done. --Daniel Mietchen 22:48, 18 June 2010 (UTC)
Hello Daniel, interesting stuff you have here on Schizophrenia. I know you are familiar with Harry Stack Sullivan. He made the distinction between Dementia Praecox (organic brain disease) and Schizophrenia, by stating that Schizophrenia was a product of maladaptive living or circunstances in the individuals life that causes the person to become Schizophrenic. I'll be using that concept within the Whitman article with the tumor. As to your suggestions about classrooms and students, I am not involved in anyway with that scenario, but if there is a project of mentoring or helping in some other way, please inform me and we'll work something out. Thanks for your attention! BTW, has your research correlated anything with GABA and Schizophrenia? John Calvin Moore 02:59, 19 June 2010 (UTC)
Hi John, my research is focused on developing early diagnostic tests for schizophrenia (and other psychiatric disorders, like Alzheimer's) by way of brain morphometry. I have no clinical experience with schizophrenia, but am fairly well acquainted with its literature, so that if you are interested in collaborating on some articles, schizophrenia could be a good start (incl. Sullivan, albeit he is not very prominent on this side of the pond). I haven't touched GABA for more than a decade, and never really was into it. As for coursework, we'll see. --Daniel Mietchen 19:55, 22 June 2010 (UTC)

stray article parts

Daniel, thanks for marking those "Article 1" article orphans for deletion. I wasn't very successful using the Eduzendium templates, so I've just started creating the articles the standard way and then adding the Eduzendium line to them, and that seems to be working. Hopefully, I won't create any more of these.Pat Palmer 16:14, 10 July 2010 (UTC)

Eduzendium header

Hi Daniel, I followed your advice and finally understood the process for creating new Eduzendium articles. It works, thank you! Now a question. Here's the header that goes onto each course page (for my course): CZ:Special_Topics_2010/EZnotice . It is awfully long; is there any way that the text (especially that stuff near the bottom) could be shortened so that it occupies less real estate on the page? I'm finding it a bit instrusive. Could all this stuff:

This article is currently being developed as part of an Eduzendium student 
project in the framework of a course entitled Special Topics at University 
of Pennsylvania. The course homepage can be found at CZ:Special_Topics_2010. 

One of the goals of the course is to provide students with insider experience 
in collaborative educational projects, and so you are warmly invited to join 
in here, or to leave comments on the discussion page. 

The anticipated date of course completion is 13 August 2010. One month after 
that date, this notice shall be removed.

Besides, many other Citizendium articles welcome your collaboration!

just be changed to this:

This article is currently being developed as part of an Eduzendium student 
project. The course homepage can be found at CZ:Special_Topics_2010

To provide students with experience in collaboration, you are warmly invited to 
join in here, or to leave comments on the discussion page. 

The anticipated date of course completion is 13 August 2010. One month after 
that date, this notice shall be removed.

It's OK if not but I thought I would ask.Pat Palmer 10:24, 12 July 2010 (UTC)

Done. --Daniel Mietchen 18:00, 12 July 2010 (UTC)

Food and Drug Administration > Catalogs > Therapeutic Equivalence Code

Pretty cool what you did to Food and Drug Administration > Catalogs > Therapeutic Equivalence Code. Do you have any suggestions on a better way to handle Preoperative care > Beta-blocker evidence table so that it shows on the subpages? - Robert Badgett 03:36, 14 July 2010 (UTC)

Done. Used the same hammer ;-) --Daniel Mietchen 07:41, 14 July 2010 (UTC)

Truth In Numbers

Thanks for your welcome! Have we met before?

I hope I can write some articles on Indonesian languages and literature here. I want to see whether this project is really different than Wikipedia. One of the few things that annoys me on English Wikipedia is the fact that it is based on consensus of general knowledge, not on the opinion of the experts. I have to admit that most of the time it is not relevant and it does not get into my way. However in couple of instances it quite annoying. Something which is said by a great number of people doesn't make it true. I was once involved in a silly discussion about the language of the motto on the coat of arms of Indonesia. It is actually in Old Javanese but someone, an American who taught English in Java thought it was in Sanskrit. Why? Because his sources, who were Indonesian laymen told him it was Sanskrit ...

However I will still edit Wikipedia and other Wikimedia projects, especially in other languages.

The Truth In Numbers will be available in October. You will be able to download the film or to buy the DVD also by then. I am not quite sure whether it is avaible by now as streaming video. The finished movie is a bit different than the trailer, which is a bit of a pity, as it is not only edited by Nick Hill but also Scott Glossermann.

I just took a peek on Koguma Main Bola. I have to say it is difficult for beginners! It uses complicated grammatical forms which can be avoided, but later on that :-)

As for the charter draft, I think it is okay. One of the things that I like is that original research is allowed.

Actually I have always wanted to take a look and join Citizendium but it never materialized. Too bad other alternatives to Wikipedia such as Conservapedia generates more traffic than Citizendium.

Cheers. Revo Arka Giri Soekatno 06:54, 14 July 2010 (UTC)

Thanks, Revi. We haven't met before but I am active on several platforms for young scientists (the German equivalent of PNN as well as Eurodoc and ways.org), and in the framework of the latter I once made plans to get scientists in the developing world to contribute to the Wikipedias in their local languages. My initial focus then was on Central Asian languages, but I also had a look at the Swahili and Bahasa indonesia editions, from where I knew your name. However, this turned out to be even more difficult than getting them to contribute to the larger Wikipedias. Not sure yet whether opening Citizendium up to original research will help with that. --Daniel Mietchen 07:40, 14 July 2010 (UTC)

Thanks

Thanks for your help copying over the charter comments. That was getting a little repetitive. --Chris Key 15:25, 16 July 2010 (UTC)

Thanks for your list of topics related to popular music and to topics from my bio. The current definition of popular music seems to me unhelpful, but my own perspective is a materialist one that probably won't satisfy a lot of scholars who prefer aesthetics sanitized from economics. I'll have a draft up in a bit, but with school starting, this is not an ideal time for in-depth work.
--Joseph Byrd 15:04, 31 July 2010 (UTC)
If time is scarce (and it usually is), then I like to work on definitions and Related Articles, so as to weave a web of context, on the basis of which the articles can be grown. Let me know if problems arise. --Daniel Mietchen 15:20, 31 July 2010 (UTC)

And thanks for catching my move gaffe on my User page and correcting it. Russell D. Jones 16:18, 1 August 2010 (UTC)

Theory of multiple intelligences

This is well outside of my area of expertise, but you are listed as a psychology Editor so perhaps you'd be able to help. A new author is a little unsure as to what to do next, could you perhaps give him some guidance? Talk:Theory of multiple intelligences. Thanks. --Chris Key 05:19, 31 July 2010 (UTC)

Done. --Daniel Mietchen 14:15, 31 July 2010 (UTC)

Thanks!

Thanks for the suggestions! I anticipate they will be very helpful as I'm beginning to navigate this site, and I hope to help get some of those sites up to approved. Thank you, and I'm looking forward to much fruitful collaboration! Rachael Cantrell 13:05, 4 August 2010 (UTC)

Delete

Hello Daniel Mietchen. I'm new here. Could you please help me? I want to delete a userpage, what should I do? Is there a template? Thank you, Ed Jussen 21:35, 4 August 2010 (UTC)

You cannot delete pages, but we have the {{speedydelete}} template to request Constables to delete pages. They will not normally delete userpages, but will do subpages thereof on such requests. If you tell me what page you are after, I can put the template in there, so that you can see how to do this. --Daniel Mietchen 21:41, 4 August 2010 (UTC)
I think that what you probably want is to delete your User:Ed Jussen/Lifecycle page now that you have uploaded that new article into the namespace. I would suggest that next time you create a personal User:Ed Jussen/Sandbox . That sandbox subpage can be used over and over again many times. All you have to do then is to simply delete (erase) the content of that page whenever you have finished a project and are ready to start another one. If you wish, I could create that sandbox for you ... just let me know. Milton Beychok 22:13, 4 August 2010 (UTC)
I placed the template. Thank you for your help. Ed Jussen 06:35, 5 August 2010 (UTC)

Eduzendium

Hi Dan, I've just been trying unsuccessfully to help Nancy after your comments. We're trying simply to set up a new course for this year on the same lines as last year; some of the articles we proposed last year were not used so we'd like to reinstate those as fresh options this year. I'm afraid I've stumbled over the mechanics, and don't know what's happened to the Eduzendium notice. Any help much appreciated! Thanks, Gareth Leng 15:15, 6 August 2010 (UTC)

OK, I'll set things up then. Probably tomorrow. --Daniel Mietchen 15:23, 6 August 2010 (UTC)

Hi Daniel, thanks for your help!! Nancy Sabatier 15:32, 6 August 2010 (UTC)

Hi Daniel, I'll have a go at the articles. Could you help me setting up the Eduzendium notice about unapproved articles? should it be on each article or on the course homepage only? Thanks again for your help. Nancy Sabatier 09:22, 9 August 2010 (UTC)
Thanks, I made quite a mess with this first article, hopefully the next ones will be better! Nancy Sabatier 12:02, 9 August 2010 (UTC)

New Physics Editor User:David William Tolfree

Daniel, I am sure you will be interested in getting acquainted with our new Physics editor. Milton Beychok 20:14, 9 August 2010 (UTC)

Thanks for the Dyscalculia edits

Thanks for the dyscalculia edits. I hope more people will add to the article. This is a little known learning disability that could use some face time. Thanks again!Mary Ash 20:01, 11 August 2010 (UTC)

This is the first of your articles that hit an area of interest to me, so there may well be further interaction on the topic. --Daniel Mietchen 00:10, 12 August 2010 (UTC)

Chipping at psychology

Partially in response to John E. Mack, I started transpersonal psychology.

Discovering that psychotherapy is an import, I split out psychoanalysis and humanistic psychology, with the WP commented out; I think I can completely rewrite at the level here and give us a fresh start. Unfortunately, my mother's library -- she was a psychiatric social worker -- is packed away.

Oh well. I can always do a Topic Informant article on the nuances of the ceiling cracks over my analyst's couch. Howard C. Berkowitz 01:22, 17 August 2010 (UTC)

Thanks for the note. Don't have any plans for these at the moment unless there is a fire to extinguish somewhere. --Daniel Mietchen 01:26, 17 August 2010 (UTC)
OK. Just wanted a Psychology Editor to know what I was doing, hopefully in a noncontroversial way. Apropos of fires, though, should I work on pyromania? Howard C. Berkowitz 01:36, 17 August 2010 (UTC)
What about starting with fire, candle, fire extinguisher, fire brigade for background? --Daniel Mietchen 01:41, 17 August 2010 (UTC)
You may be getting more than you expected with fire extinguisher. There is some material in 9-11 Attack in New York about how not to do command and control for a high rise fire.

Lost my picture

Hello Daniel Mietchen. This picture Image:Lifetree.jpg miraculously disappeared. I really uploaded it[1] but it left me. Only the thumb stayed. Can you maybe see what's wrong? Thank you in advance. I did not keep the original ... Ed Jussen 21:49, 18 August 2010 (UTC)

Hi Ed, and thanks for the note. We have had some problems with image files recently, and so far, all of them could be solved. I have notified the tech people of this case. --Daniel Mietchen 22:01, 18 August 2010 (UTC)
Thank you, I uploaded this illustration again and from now I'll save them all on my computer> Ed Jussen 08:36, 19 August 2010 (UTC)
Thanks. Yes, this seems to be the best way to do it. --Daniel Mietchen 08:37, 19 August 2010 (UTC)

I would appreciate your comments

Daniel, I have just written a new article and the title will be Smog when I upload it into the article namespace. It is currently in my sandbox at User:Milton Beychok/Sandbox.

I know that you are probably not an expert on the subject. However, I would very much appreciate your review of it and giving me any comments, additions, deletions, typo corrections, or revisions you care to offer on my sandbox talk page. I am fairly sure that there must be some parts which could be better written from the viewpoint of clarity and understanding.

Thanks in advance, Milton Beychok 02:17, 22 August 2010 (UTC)

Hi Milt, wrong timing, but I will try after coming back from this conference. --Daniel Mietchen 16:48, 22 August 2010 (UTC)

Creating subpages

Hello Daniel, I have begun to write articles but don't know how to create a "subpage" .The instructions for this are unclear to me. So could you help me with that please? The first article which will need a subpage is Diglossia. Thanks! Stefan Olejniczak 11:47, 23 August 2010 (UTC)

Hi Stefan! Thanks for dropping by. I just set the subpages up via these edits. In doing so, I made one mistake that I also corrected in the process. Please take a look and let me know if something is not clear. --Daniel Mietchen 13:05, 23 August 2010 (UTC)
Hello Daniel. It looks OK, thanks. And could you do the same now for Monophthong please? Stefan Olejniczak 13:08, 23 August 2010 (UTC)
Can you give it a try? Just start by clicking the "[show]" link and do whatever you think is appropriate. I will go after you and correct things if necessary. --Daniel Mietchen 13:12, 23 August 2010 (UTC)
Sorry, I clicked on " ...the "metadata template" and tried to fill in as it is told in the instructions, but it did not seem to work. So I think I will need more help with this. Stefan Olejniczak 14:15, 23 August 2010 (UTC)
You can use this link: Special:MetadataForm which gives you a form to fill in. (But following the Metadata link, filling in, saving it, creating talk page (with "subpages") and then using the links on the subpages template should also work.) --Peter Schmitt 14:38, 23 August 2010 (UTC)
Hi Peter, thanks a lot! This should help. Stefan Olejniczak 14:53, 23 August 2010 (UTC)
It is important to note that for best results you should use Special:MetadataForm before creating the article. --Chris Key 15:44, 23 August 2010 (UTC)

What has happened to our Welcome page?

The Welcome page has a big white space in the left column (of the two column set-up) and the New Draft of the Week in the right column goes on and on and on ... way beyond what is ever has done before this.

Is someone playing around with it? Looking at the History doesn't seem to explain what happened. Milton Beychok 09:01, 18 September 2010 (UTC)

The reason: Editing the article changed the "NDotW"-markup. I added markup. To me, this proves that the page should not be transcluded. Instead an edited excerpt should be used. --Peter Schmitt 12:25, 18 September 2010 (UTC)
To me, this prove is not convincing — the transclusion has been in use for over a year and rarely caused problems of this kind. But perhaps we should use a template on the featured article or draft that indicates their being featured, and asks for special caution with the markup. In any case, we have a new featured draft now. --Daniel Mietchen 12:39, 18 September 2010 (UTC)

Does the new Volatility (chemistry) article relate to Biology or Physics?

Daniel, does the new article Volatility (chemistry) relate meaningfully to physics or biology? If you think so, I will add either Physics or Biology as categories in the Metadata template so that it can be considered for nomination by you or another physics or biology editor. My reason is that there are no active engineering or chemistry editors other than myself and I am not eligible to nominate it.

I sure wish we could coax Paul Wormer into returning. Milton Beychok 05:05, 24 September 2010 (UTC)

Volatility is very relevant to things like pheromone signalling, so I added in Biology. Yes, getting Paul back in is a goal of mine too. But I guess we will have to do some clean-up first in how we handle expertise, especially in certain areas. --Daniel Mietchen 09:52, 24 September 2010 (UTC)
As a follow-up about Volatility (chemistry) , would you now please consider nominating it for approval? Please let me know. Milton Beychok 16:04, 24 September 2010 (UTC)
OK, I will take a closer look somewhen these days. --Daniel Mietchen 16:10, 24 September 2010 (UTC)
Thanks, I will wait to hear from you whenever. Milton Beychok 17:05, 24 September 2010 (UTC)

Other kinds of volatility

In computers, volatile memory loses its contents when power is applied; the contents of nonvolatile memory are persistent.

Perhaps chemistry or perhaps military, the terms nonpersistent and persistent, when applied to chemical weapons, really mean more volatile (e.g., phosgene, sarin) or less volatile (e.g., mustards, VX). Howard C. Berkowitz 20:45, 24 September 2010 (UTC)

Howard, I know about volatile memory in computers as well as volatile stocks, markets, etc. in the world of finance. Then there is volatile as a description of human behavior.
That's why I named this article Volatility (chemistry) so as to disambiguate it from the many other meanings of the word "volatile". I really think that volatility as a measure of persistence for poison gases is a military term rather than a chemistryl one. Milton Beychok 20:57, 24 September 2010 (UTC)
Added to disambiguation page. Howard C. Berkowitz 21:15, 24 September 2010 (UTC)

More about Volatility (chemistry)

Daniel, as you suggested, I added a new section to the article that discusses ionic liquids and the ongoing research into how odors are used as social behavior signals by insects as well as by mammals. Milton Beychok 14:56, 2 October 2010 (UTC)

Thank you, Milt. I am still on the road but will get to it as soon as I can. It would be best for me to rework those passages directly, and I would prefer 3-editor approval here anyway. --Daniel Mietchen 20:00, 2 October 2010 (UTC)
What help is needed? Mind you, if one considers the perfumes worn by some people, sociology is probably in order to explain why they are not killed. Howard C. Berkowitz 20:25, 2 October 2010 (UTC)
I plan to rework the biological section and add a few words on intramolecular prerequisites for volatility. This would require a third editor for approval. I think we should stick to the chemistry here, not branch out. --Daniel Mietchen 20:31, 2 October 2010 (UTC)
Hi, Daniel ... just a gentle reminder now that you are back. Milton Beychok 17:45, 14 October 2010 (UTC)
I hope to get to it over the weekend. --Daniel Mietchen 17:46, 19 October 2010 (UTC)
Daniel, just a gentle reminder about your "plan to rework the biological section and add a few words on intramolecular prerequisites for volatility" ... the article is still waiting. Thanks, Milton Beychok 23:56, 17 November 2010 (UTC)
I actually went through two papers on the matter that weekend, but took my notes on paper and haven't found the time & mood to put them in here. I also thought about structuring some related articles (e.g. pheromone or olfactometre), and I was looking for images on the matter. So I am confident it will happen, but can't tell you when. --Daniel Mietchen 00:35, 18 November 2010 (UTC)

Please see my roast turkey page comments

The question was not to spell out the word centigrade but whether to spell out the word degrees, which I did, or to use the degree symbol. Your edits returned the article so that it is now written both ways.Mary Ash 20:52, 13 October 2010 (UTC)

Sorry about that!

I hate when people get my name wrong. I'll make sure that no-one spelled your's wrong before running the software. D. Matt Innis 12:55, 14 October 2010 (UTC)

As long as it's a wiki page I can edit, I don't mind. Please also check for this typo and the erroneous listing I reported by email. --Daniel Mietchen 13:42, 14 October 2010 (UTC)
Got it (and did catch one). D. Matt Innis 14:36, 14 October 2010 (UTC)

Regarding lemma article, Thylakoid

Daniel, regarding your recently created lemma article, Thylakoid: I had already created an article entitled, Thylakoids. Probably should have named it in the singular. Redirect from the lemma doesn't seem to work.

Can I delete the lemma and move Thylakoids to Thylakoid? Please advise. Anthony.Sebastian 00:33, 26 October 2010 (UTC)

Okay, I fixed it. Thylakoid now redirects to already existing Thylakoids. Probably should reverse order. Anthony.Sebastian 02:41, 26 October 2010 (UTC)
I asked the constabulary to reverse the redirect. --Daniel Mietchen 07:49, 26 October 2010 (UTC)
Not sure what "reverse the redirect" means, as no article with the singular exists, so I supplemented your request, for clarity, I hope: here. Anthony.Sebastian 01:30, 7 November 2010 (UTC)

User page decision

Well done, Daniel, keep it up. Aleta Curry 21:50, 5 November 2010 (UTC)

And I concur!Mary Ash 22:14, 5 November 2010 (UTC)
Thanks! --Daniel Mietchen 22:23, 5 November 2010 (UTC)

Approval?

Hi Daniel, can you take a look at Interspike interval histogram with a view to approval, if you feel competent? it's a short article but says as much as I think needs saying. I wrote it so can't act.Gareth Leng 13:47, 10 November 2010 (UTC)

Upon first sight, I would think much of this would have to go to Interspike interval first. Will definitely chime in by the end of the week. --Daniel Mietchen 15:04, 10 November 2010 (UTC)
I commented at Talk:Interspike interval histogram. --Daniel Mietchen 23:30, 12 November 2010 (UTC)

We have started our campaign for donations and we already have $372

Daniel, I just wanted to let you know that we started our drive for donations a few hours ago and we already have $372. Regards, Milton Beychok 05:30, 11 November 2010 (UTC)

Too late to be news - I already tested the button. --Daniel Mietchen 05:34, 11 November 2010 (UTC)
Daniel, it looks like you added the donate button (which I presume is the one that Chris created) and it sure is simpler than my manual instruction. Thanks very much!! The whole CZ: Donate article looks very professional now. Milton Beychok 07:43, 11 November 2010 (UTC)
Daniel, do you think it might be helpful to add a sentence to CZ:Donate explaining that donors do not need to log into citizendium@hotmail.com nor do they need to register to create their own PayPal account. The Donate button may possibly confuse some donors and they may believe that they must create their own PayPal account. What do you think? Milton Beychok 08:18, 11 November 2010 (UTC)
Done. Can you start a stub on PayPal? I don't know them very well. --Daniel Mietchen 08:52, 11 November 2010 (UTC)
Will do, but it may be quite some while. Much too busy with MC and donation drive at the moment. Milton Beychok 01:37, 12 November 2010 (UTC)

War criminals and crimes

The term war criminals and war crimes are accurate and factual. The Nazi war criminals were convicted for their war crimes by a war tribunal. All this is based on fact and documented. I'm not sure what the problem is when it comes to using these historically accurate terms. You can not re-write history to sanitize it. I hope I understood the problem correctly between the interested parties. Finally, page blanking is a no-no at some wikis. I don't know about here, but I would not do it myself. MHO Mary Ash 16:23, 15 November 2010 (UTC)

It's a bit more nuanced in this case, as Hitler and Mengele, for example, never appeared before a court. Nevertheless, there is historical reason to use the term, in these specific cases, and at this specific time. This is some of the material I would have placed on the blanked and locked page.
Martin is correct that something such as "alleged criminal" might be used today, but this is presentism as applied to historiography. Direct quotes should never be redacted for reasons of political correctness, and I've been attempting to explain the usage of Mengele's time. I note, for example, that the four-power proceedings at Nuremberg was titled "trial of the major war criminals". That trial also criminalized membership in the SS, and there is little question Mengele was an SS officer. Howard C. Berkowitz 17:38, 15 November 2010 (UTC)
Mary, I do not see why you posted this comment here on my talk page instead of any of the places concerned with the debate. Since you used "you" here without any further qualifiers, I assumed that you were addressing me and that what could otherwise (e.g. on one of the article talk pages) be rather neutral comments were in fact severe accusations. I have neither denied war crimes nor tried to re-write history, nor blanked a page, nor edited either of the disputed pages myself. What I did do is react to a request for clarification of the usage of these terms and rule that the blanked page be replaced by some meaningful text. In light of David Finn's comments below, I am willing to consider this a simple misunderstanding. I apologize for my part in it, and I have revised my original comment accordingly. --Daniel Mietchen 09:03, 19 November 2010 (UTC)
Please be more careful with the terms you throw around, Daniel.
Mary said:
Finally, page blanking is a no-no at some wikis. I don't know about here, but I would not do it myself.
She did not say that you blanked the page. She did not say that anyone blanked the page. She simply said that the page was blanked, which is a fact. How you interpreted that as an accusation that you blanked the page is not quite clear, but, to use your words, it seems that you did not understand the problem correctly when you replied that she was accusing you.
I would also note that Mary is using you in her initial comment to refer to the plural, although I realize this may have been too nuanced a use of English for some.
Nonetheless, your counter of having been falsely accused was ill-thought out. Please revise. David Finn 08:20, 19 November 2010 (UTC)
Thank you, David, for reading so attentively and for being frank. I have revised my comment. --Daniel Mietchen 09:03, 19 November 2010 (UTC)
No problem. I am going to take a break now, and I apologise that this and my other posts have been slightly abrasive. I really want there to be a good environment that promotes editing so that I can do some, but I found out today that someone who I would consider to be a great influence on my Citizendium contributions is being debated on in a negative way and it rather upset me. Howard is our most prolific contributor and has always been willing to compromise and collaborate in my dealings with him. I have also noted his ongoing relationship with Mary Ash which, although initially rocky, did serve both them and Citizendium well. I appreciate you taking the time to re-read your words, and also notifying Mary of that. Cheers. David Finn 09:37, 19 November 2010 (UTC)

Eduzendium article metadata pages

Thank you for your message on my User_talk page and for the new BEE 4640 home page on CZ. The metadata template task has me thoroughly confused. I followed the directions blindly and ended up with the following error message: < CZ:Cornell University 2010 BEE 4640 Bioseparation Processes

The ((subpages)) template is designed to be used within article clusters and their related pages. It will not function on CZ pages. Retrieved from "http://en.citizendium.org/wiki/CZ:Cornell_University_2010_BEE_4640_Bioseparation_Processes/Metadata_template" Category: Misplaced subpage"

I have begun creating new articles as needed using the "create new article with subpages" worksheet, though they lack the template structure set up earlier in the process. CZ:Cornell_University_2010_BEE_4640_Bioseparation_Processes/Template_article

Three students want to write about aspects of chromatography, expanding the existing stub article to include material on a) chromatographic methods (e.g. gas chromatography, HPLC, paper chromatography), b) adsorbent types (e.g. ion exchange, reverse phase, size exclusion) and c) chromatography theory (e.g. adsorption isotherms and column dynamics). Do you recommend that they work directly on the existing draft, or create new articles within the Eduzendium category, which the Editors can later merge as they see fit?

If you are too busy with the hosting/management issue to assist at the moment, please feel free to refer me to another editor. Thank you. Jean B. Hunter 03:13, 17 November 2010 (UTC)

Hi Jean, thanks for the feedback on the Eduzendium templates - there is certainly room for improvements, and they have not been integrated with Special:MetadataForm, since the latter does not yet allow customized preloading of content. The way things are supposed to work is the following:
  1. Go to the course homepage and add the titles of new articles, as shown here, using dielectrophoresis as an example.
  2. Follow the instructions displayed for Dielectrophoresis: Open this page in a separate tab or window to help you guide through the process, then go back to the window with the course homepage and click the button for Dielectrophoresis and try to follow the guide (reloading the course homepage after each "save" step is required). If there is anything not clear, please drop me another note - we really want these templates to be useful and will get rid of them if they are not. I have fixed the formatting for electrophoresis.
The error message you get about subpages is normal, since Eduzendium articles (and the course-specific templates) are in the CZ: namespace, for which the {{subpages}} template system was not designed. The articles to be created for the course, however, will all be in the main namespace, where the subpages template will function properly and set up the headers with links to the subpages.
As for chromatography, merging is complicated and very few people on the wiki have the technical permission to do that. So I would suggest that the students either jump right into the existing article, preferably after having familiarized themselves with basic formatting.
--Daniel Mietchen 09:49, 17 November 2010 (UTC)
Mr. Mietchen, I began an article Crossflow membrane filtration without realizing there was a template already set up for our BEE 4640 course, called crossflow filtration. Professor Hunter suggested I seek your help in remedying the situation, as there is no need to have both. Can you point me in the correct direction? Thank you. Justin D. Finkle 19:25, 17 December 2010 (UTC)
Hi Justin,
no need to call anyone Mr. here - we generally use first names instead, though you are probably right in treating your professor differently.
I moved your Crossflow Membrane Filtration to Crossflow membrane filtration to go conform with our CZ:Naming conventions and transferred the BEE 4640 formatting to it. I will ask Jean for his opinion on whether the final article title should be Crossflow filtration or Crossflow membrane filtration. --Daniel Mietchen 21:22, 17 December 2010 (UTC)
Hi Daniel,
Let's keep it in its current form Crossflow membrane filtration. Thanks for your help. Jean B. Hunter 21:55, 17 December 2010 (UTC)
Thank you both for the help. Justin D. Finkle 23:56, 19 December 2010 (UTC)

New Biology Editor

We have a new Biology editor named Dorian Q. Fuller. Perhaps you may wish to put a welcome message on his Talk page. Milton Beychok 16:47, 17 November 2010 (UTC)

Emails & forum messages

I was away for two days and now have more than a hundred of CZ messages in my inbox, and several hundreds of forum messages have been posted since I looked last. Will take a while to crawl through, and I will likely not respond to all that I normally would. If you think there is a post or message I should absolutely attend to, please give me a reminder here. If it absolutely has to remain private, then please send me a brief reminder message with "Citizendium reminder" in the subject line. Thanks! --Daniel Mietchen 09:27, 21 November 2010 (UTC)

Free space

I wonder if you would have an interest in contributing to the new article Free space (electromagnetism)? John R. Brews 20:29, 25 November 2010 (UTC)

Thanks for your note, John - I will see what I can do. --Daniel Mietchen 15:32, 29 November 2010 (UTC)

ME request

Please see Talk:Wikileaks. D. Matt Innis 19:45, 4 December 2010 (UTC)

Thanks for your note. I am still on the road and won't be back to normal before Monday evening. The matter seems too complex to be resolved on the fly, so I think that locking the page just for the two discussants is the best for the time being, and I will get back to the matter as soon as I can. --Daniel Mietchen 00:57, 5 December 2010 (UTC)
Thanks for the response. The article is currently unlocked to all as Sandy has volunteered to try a rewrite. I'll follow your advice if it should flare up again. D. Matt Innis 01:17, 5 December 2010 (UTC)
I see you've taken care of it already, thanks! I'll enforce your ruling. D. Matt Innis 01:21, 5 December 2010 (UTC)

Final reminder about Volatility (chemistry)

Hi, Daniel: I know you have been busy ... we all are. But it was back in early October when I added the discussions that you asked to be included in the subject article ... and which you promised to re-work.

I promise that this is my last reminder. Happy Christmas! Milton Beychok 21:48, 13 December 2010 (UTC)

Hm - sorry, Milt. I have moved it up my list again, but may need another reminder. --Daniel Mietchen 22:14, 13 December 2010 (UTC)

Approvals help please

Hi Daniel

I'm requesting approval on Miniature Fox Terrier, which has been sitting stable for a good long while, and which I can't approve as author, and Heterotaxis. Can you spare the time to lend a hand? Aleta Curry 00:29, 14 January 2011 (UTC)

Hi Aleta, I am afraid both articles are beyond the areas in which I can approve, but I will check them (had actually followed the drafting of Heterotaxis at the time) and see what I can do. --Daniel Mietchen 12:04, 15 January 2011 (UTC)
None of our currently active biology editors really work in quite the right field for either of these articles. Perhaps it is time to consider trying an experiment. For a long while now, I have wondered whether we could convince a non-citizen with the appropriate expertise to review and approve one of our articles. If the article is good enough and we make the process easy enough, we might attract a new member or establish a sort of consultant relationship. Would someone like to make an announcement asking whether anyone has a friend who would be qualified to approve one of these articles? --Joe Quick 15:51, 15 January 2011 (UTC)

User Discussion Page and Warning Removal

The discussion in this section is incomplete, since Mary has removed her initial contributions to it. Peter's second comment (still present below) contains all there is to say about the matter.

Yes, the email said that you could clear your talk page, to which I did not object. Note that I commented on the archived thread. --Daniel Mietchen 02:53, 30 January 2011 (UTC)
Mary, there appears to be a misunderstanding concerning your talk page. Daniel left his remark on your archived talk page. Anyone can do this. Your talk page was not reverted by Daniel and no-one else has reverted his edit either. I understand that when things are tense, misunderstandings can occur. This only means that it is very important that everyone double check and reconsider before clicking the 'send' button. You should also consider giving people 24 hours to respond to your emails. D. Matt Innis 16:18, 30 January 2011 (UTC)
Mary, the diff you cite does not show a revert but a comment added on your archived talk page, just as Daniel has indicated above. --Peter Schmitt 17:18, 30 January 2011 (UTC)
Be reasonable, Mary! There is no reason at all for your indignation:
  • Nobody touched your user page
  • Talk pages are not taboo. There is nothing wrong with adding a comment to a section on an archived talk page. There is only one "threat": It may remain unnoticed.
  • Neither your talk page nor your archived talk pages were "reverted" or "rolled back".
  • If you read what Daniel wrote then you will see that he did not issue a second warning. On the contrary, he "deleted" the first one.
  • Doing so on an archived page is much more discreet than doing it on the current talk page. It shows that he accepts its removal from the talk page.
  • Daniel's comment was -- as his signature shows -- an official message by the ME. He is fully authorized to leave such messages.
--Peter Schmitt 18:47, 30 January 2011 (UTC)
On the advice of a esteemed CZ contributor I have removed all comments concerning this matter. I will be leaving an opinion piece on my user page instead. If I accidentally removed any other user comments I apologize in advance. My only intent was to remove my own comments. Mary Ash 19:56, 30 January 2011 (UTC)
For all concerned I removed the talk page comments as advised by an esteemed Citizendium member. Let's be clear about that.Mary Ash 22:58, 30 January 2011 (UTC)

My Smog Discussion Page Comments

Daniel I just posted this on the Smog talk page. Here's what I posted:

(unindent) First I did offer sources see:

       * EPA Region 9 Owens Valley
       * The Lake Project
       * The Federal Register
       * ABC Australia
       * Where vehicles are not the primary cause of PM10 pollution
       * A picture from the area 

They all clearly state the importance of PM 10 air pollution and the man made causes thereof. The only part I was incorrect about was the percentages given by a forest ranger many years ago. As this is an informal discussion, and not sourcing an article, the inclusion of personal information as part of an informal discussion is professional and warranted. Also, I contacted a seasoned CZ contributor about this talk page discussion and was assured that my comments were professional on my part. I do believe lively discourse and intelligent discussion, even if the viewpoints differ, does much for collaboration. In fact, I was strongly supporting the writing of PM 10 by professionals far better informed than I am as I do believe this is an important issue that needs to be written about. I was sincerely trying to encourage and compliment those who could do the task. As to my professional credentials when writing about PM 10, I could give a brief non-technical overview as I was educated by the air pollution control board engineers, water board personnel and other environmental personnel during my two years of providing professional coverage of PM 10 and other air pollution matters during my years as an environmental journalist. I am well versed in air pollution and its effects thanks to the many professionals who kindly shared their expertise and time so I could write about these topics.Mary Ash 03:11, 30 January 2011 (UTC)

Thanks for the notification. I will not reply there, since you missed my points completely, and this is evident to anyone who actually reads my post there with some attention to detail. --Daniel Mietchen 22:30, 30 January 2011 (UTC)
Nope. I did not miss your points but I do respectfully disagree with them. I made an attempt to compliment and discuss the authors concerned. I was hoping someone would write an article on PM 10 or add it to the smog article. It seems my comments were misunderstood as I originally commented on the man made events that caused significant and out of compliance PM 10 air pollution in the Owens Valley. Milt seemed to think I was writing about naturally occurring events and I was not. You can not compare naturally occurring PM 10 events to man made PM 10 events. The naturally occurring event will usually produce more PM 10 matter than the man made ones. I was using my personal experiences, and data, as a frame of reference as I do not have the background to comment otherwise. I'd offer the analogy of the old telephone party but that would be an American term and probably misunderstood. Suffice it to state I thoroughly understand the effects of PM 10 air pollution and non-compliance according to the local air quality control board, CARB, local water board officials and the EPA. They all thoroughly tutored me on the subject and I sold many a newspaper for a couple years covering this issue. Or a good journalist is a Jack (or Jill) of all trades but a master of none.Mary Ash 22:53, 30 January 2011 (UTC)

New user Joel M. Williams

Daniel, we have a new Chemistry editor. You may wish to post a welcome message on his Talk page. He is also a new physics author as well. Milton Beychok 03:07, 14 February 2011 (UTC)

Thanks for the note, Milt. Done. --Daniel Mietchen 16:43, 14 February 2011 (UTC)

OASPA

Daniel, note 10, the link to Poynder's blog about the alabama shooting seems to be a dead link. Russell D. Jones 16:57, 15 February 2011 (UTC)

Just clicked on it in your post above, and it worked fine. Dunno what the problem was/ is. --Daniel Mietchen 17:26, 15 February 2011 (UTC)

Financial Report as of March 15, 2011

Please read our Financial Report as of March 15, 2001 for complete details on our financial history and our current financial situation. If you have any questions, please ask them on CZ Talk:Donate. Milton Beychok 00:12, 18 March 2011 (UTC)

Thanks for the notification, and for compiling the report in the first place! I had read it already, though. --Daniel Mietchen 01:10, 18 March 2011 (UTC)

New Physics and Mathematics author

We have a new Physics author, Amin Yazdani, whom you might like to welcome to the project. He is a student at a university in Iran. Bruce M. Tindall 14:31, 18 March 2011 (UTC)

Thanks, Bruce. Done. --Daniel Mietchen 23:22, 18 March 2011 (UTC)

Nobel Prize

Hi, Daniel, please take a look at the discussion page at http://en.citizendium.org/wiki/Talk:Nobel_Prize -- Thanks! Hayford Peirce 01:05, 19 March 2011 (UTC)

New Biology author

User:James Parker is a new Biology author, a student at Edinburgh interested in molecular genetics. Bruce M. Tindall 17:29, 21 March 2011 (UTC)

Thanks - I left him a note. --Daniel Mietchen 09:46, 22 March 2011 (UTC)

European views about Libya

Operation Odyssey Dawn is perhaps not the best place for all activity, but it's something I can keep updated. I am eager to get European views into it -- I know very little, for example, of the German position. Improvements in the article are welcome, as well as suggestion for reorganizing on a broader set of articles. Howard C. Berkowitz 10:23, 22 March 2011 (UTC)

The official German position is intentionally not a clear one, since there were elections last Sunday and there will be two more (in other Landers) this Sunday. Military interventions of any kind have very little support amongst German voters. --Daniel Mietchen 21:16, 22 March 2011 (UTC)

periodic table

As I was clicking through the periodic tables I noticed there was an improvement, if not fixed. Your recent edits must have been on the right track. Chris Day 16:13, 28 April 2011 (CDT)

I think it is fixed now. Good to see you back here! --Daniel Mietchen 16:18, 28 April 2011 (CDT)
I just checked some more and it is fixed. Good job. Glad to be back. I was just wading through some of the forum threads and the governance issues seems a little crazy. But nice to see many familiar faces working hard. I really must try and find more time for this. Chris Day 16:20, 28 April 2011 (CDT)
Thanks a lot for fixing that template problem, Daniel. And , Chris, it is wonderful to have you back. Milton Beychok 16:30, 28 April 2011 (CDT)

External Links for XML article

Daniel, I see that you posted a link on the XML article, in External Links. I really don't think that this is an ideal external link. If you're willing, I'll try to find some others, but remove that one. That link (http://lemire.me/blog/archives/2010/11/17/you-probably-misunderstand-xml/) is a rant by someone who doesn't seem to have a very broad understanding of how XML is used in the world, and his rant is one of those political stances (i.e., the rant against SOAP-XML) that I don't think CZ ought to represent unless the controversy is to be represented in full. Please let me know if it's OK to replace that link with some more general ones that would help someone get oriented more usefully about XML.Pat Palmer 10:47, 1 May 2011 (CDT)

Hi Pat, if you think another link would be an improvement (and I agree that there should be many better ones), then that's what wikis are made for. Surely no need to ask me (a relative newbie in that area) - just go ahead! --Daniel Mietchen 14:25, 1 May 2011 (CDT)
Speaking of XML, has anyone programmed an XML-to-MediaWiki converter? PLoS journals provide for downloading XML versions of articles, some of which CZ could import and develop further. Anthony.Sebastian 21:09, 1 May 2011 (CDT)
I have explored this in quite some detail over the last few months. So the general answer is no, but almost (see this discussion), while a specific answer for some kind of XML (which deals with taxonomic treatments) is yes, as shown in this article, and discussed more broadly here. However, discussing any application of that here at Citizendium is moot as long as PR-2010-013 is not amended, as discussed in the following section. --Daniel Mietchen 13:58, 2 May 2011 (CDT)

Re: http://en.citizendium.org/wiki/User:Daniel_Mietchen/PR-2010-013#Revised_phrasing_.285.29

Daniel, as you know, five rephrasings of your original, now on http://en.citizendium.org/wiki/User:Daniel_Mietchen/PR-2010-013#Revised_phrasing_.285.29. Should you consolidate, submit as new proposal? What can I do to help? Anthony.Sebastian 21:04, 1 May 2011 (CDT)

It's probably time to submit it in some new form, yes. But for me, there are other important things to consider, e.g. Modifications to the Charter. Will see how we can move forward on these fronts, and any help and suggestion is welcome. --Daniel Mietchen 14:02, 2 May 2011 (CDT)
What do you think of using some BMC Q&A paper to test the waters? For instance, Who is H. sapiens really, and how do we know? could be used to beef up Homo sapiens, Human evolution, DNA, DNA sequencing and some related articles. --Daniel Mietchen 16:00, 2 May 2011 (CDT)


Press page

This http://en.citizendium.org/wiki/CZ:Press appears as number 2 on a google search. Obviously, it needs you as a contact (and some other updating maybe. Martin Baldwin-Edwards 20:40, 2 May 2011 (CDT)

Yes. Thanks. Updated it a bit. --Daniel Mietchen 06:28, 3 May 2011 (CDT)

What do you think of Los Alamos National Laboratory?

Daniel, I think that Los Alamos National Laboratory is ready to be nominated for approval. Would you consider nominating it? Milton Beychok 06:00, 14 June 2011 (UTC)

Hi Milt, I read most of it and concur that it is in a good state. However, I will not nominate it, as I do not have relevant expertise. --Daniel Mietchen 02:47, 21 June 2011 (UTC)

Criteria for becoming a Health Sciences Editor

Dear Daniel, I read the matter at http://ec.citizendium.org/wiki/EC:PR-2010-017/Healing_Arts_workgroup, which states, "Healing Arts Editors that are currently licensed to practice their discipline shall be accepted as Health Sciences Editors". May I ask you, as the CZ Managing Editor, how CZ verifies that a person is licensed - is it his/her Registration Certificate or his name being mentioned on his/her College web-site?—Ramanand Jhingade 18:03, 16 June 2011 (UTC)

I would assume this verification to be a task for the EPA. --Daniel Mietchen 02:53, 21 June 2011 (UTC)

New Physics author named Jim Earl

Hi, Daniel: We have a new Physics author named Jim Earl. Please visit his Talk page and leave him a welcome message. Regards, Milton Beychok 08:02, 29 June 2011 (UTC)

Funding for continuation of Citizendium

Daniel: Undoubtedly you have been thinking about ways to secure funding to continue CZ. Can you give us any encouraging progress reports? As ME, you have charter authority to contact outside sources for relations with CZ.

Have you put heads together with Larry on this issue?

Microsoft tried an Encyclopedia, then gave up. Perhaps they would like to participate in CZ. Funding-wise, partnering, making Encarta content available for updating, notifying their contributors about CZ.

Microsoft needs a much bigger toehold in the academic world.

I know you have many other passions besides CZ. How does CZ fit into your agenda? How do you see CZ's medium-term future?

Will you, as ME, speak to us on these issues? Anthony.Sebastian 19:20, 6 August 2011 (UTC)

It is entirely possible that Daniel will have an insight into the financial situation, I would also be interested to know his thoughts on the matter.
As far as his having responsibility for relations outside of CZ, you will also know that Cherter specifies that while the ME should represent the Citizendium in its relations with external bodies it is the MC who shall make all the financial and legal decisions for the Citizendium.
Since Larry is already part of the MC, and has indicated that he believes CZ shall not come to an untimely end due to finances alone, it might be more appropriate to ask the MC directly. Notwithstanding the fact that Daniel may well have been active on this issue, it is clearly one of responsibility for the MC, and Daniel would (I believe) only be representing the MCs wishes to outside authorities should he be discussing finances with them.
As to how CZ, or his role as ME, fits with Daniels agenda I of course have no clue. If your question was a personal one then excuse my intrusion - if your question was how his personal circumstances are affecting his role as ME then I think that a question best asked of all elected officials, for whom election carried some responsibility. I can assure you, however, that similar questions to Council members have found an unwelcome audience in the past.
You are correct that we have heard little about potential financial solutions, beyond paying for it ourselves. Really it is the MCs job to work out the finances, and while the outside world may need a go-between to explain the MCs position, here at CZ maybe we could all manage with just hearing what the MC are doing about it? Say, on the forum?
And as far as CZs any-term future goes, the statistics page will give you an idea of what direction CZ is heading in. CZ has been accused of being a "vanity site", alternatively a "hobby site", where a handful of members pay to have a space they can publish in, but that no-one will ever visit, much less use for encyclopedic purposes. Reversing that trend is likely to not be a purely financial consideration. David Finn 09:37, 7 August 2011 (UTC)
(CC) Image: John R. Brews & Aleksander Stos
Page edits from statistics page with superposed trend lines. Crisis points?
The figure at right shows some very broad trends. I wonder whether anyone at CZ has made an analysis of what has happened? If the trendlines are accepted there are three epochs: (i) Initial epoch of increasing activity ending mid 2008. This period ended with some catastrophic event that seems to be very tightly associated with mid-2008. (ii) Second growth period ending late 2009. This period ended with another catastrophic event and a short period of equilibration following it. (iii) Third period of steady decline, projected to end CZ altogether by late 2011.
What assessment has been made as to the origins and demise of the two golden ages and why has a third rebound not occurred? John R. Brews 14:34, 7 August 2011 (UTC)
The graphs on the statistics page do not show discontinuities in number of editors, although there has been a slow decline from the values in 2007-2008. The discontinuities in activity appear to be more related to activity of these authors on CZ. They became suddenly disillusioned? The really active authors left, leaving behind those not so productive? John R. Brews 15:01, 7 August 2011 (UTC)
Data points?
D. Matt Innis 16:30, 7 August 2011 (UTC)
More points?
  • Charter drafting process begins October 2009.
D. Matt Innis 16:34, 7 August 2011 (UTC)

←(Out-dent)
John, thanks for following up on my query to Daniel re funding for CZ. I agree with the points you make.

Re: "As far as his having responsibility for relations outside of CZ, you will also know that Cherter specifies that while the ME should represent the Citizendium in its relations with external bodies it is the MC who shall make all the financial and legal decisions for the Citizendium."

Yes. However, that doesn't mean that Daniel, in representing CZ in relating outside CZ, cannot explore funding opportunities in conjunction with exploring partnering in the broadest sense of the term. Certainly, the MC will make decisions in those matters, though the ME has additional discretionary powers/obligations that might bear on this issue.

Certainly, if I knew a 'philantropist', potential large CZ donor, I'd want to receive advice from the MC what they want for the next steps. The MC might decide to investigate and set terms and render decisions, but they might not want to spoil any special relation I already have.

Matt, I thought of starting a forum topic saluting CZ's most prolific content contributers. What do you think? Perhaps a better way to highlight them, especially if that better way stimulated the less prolific to want to make the 'Dean's List', so to speak. Anthony.Sebastian 19:34, 7 August 2011 (UTC) [sig added]

Anthony, I think that is exactly the kind of thing we need - especially if it included links to articles that have red links that need further developing ;-) D. Matt Innis 20:25, 7 August 2011 (UTC)
I think this thread is something for the Forums, where I will respond as soon as I get a decent internet connection. As for the graph, I can't pinpoint what is behind the plunge in 2008 but the two other spikes are due to bot activity being stopped (September 2009) and briefly resumed (January 2010). --Daniel Mietchen 21:20, 7 August 2011 (UTC)
My reply is here. As for opening up a thread to thank people, I don't think we need another forum thread, and the best way to thank people for their work on articles is generally to improve some of those articles. --Daniel Mietchen 02:47, 8 August 2011 (UTC)

Average edits

(CC) Image: John R. Brews & Aleksander Stos
Average edits

Daniel: A plausible explanation for the first discontinuity in this chart in 2008 is a sudden discontinuation of activity (for example the departure of a number of contributors), which removes a constant from the edit rate, causing an immediate downward step in Sept 2008. Casual observation in the science and math areas shows that there were indeed a number of withdrawals at this time. A departure naturally leads to a downward step, followed by a continuation of the same steady rise seen before that. The second drop, in 2009 may have the same cause,possibly augmented by a stop in bot activity, but the downward step is not followed by a continuation of the rise seen before the step, as expected from a step drop in activity.

And of course the steady subsequent decline is serious and unaccounted for. Without the brief bot resumption arresting this fall, causing a momentary flat plateau, the steady drop in editing activity would commence earlier, immediately after the second step drop. The onset of the present-day steady drop then would correlate with the event causing the second drop.

The steady decline seems to suggest the drop in activity is an ongoing phenomenon, as removal of one or more contributors would cause only a step down in edits upon withdrawal, not a continuing drop. Apparently CZ is seeing a net steady loss of contributors as time progresses.

I suspect the exodus in 2008 was not adequately addressed to find its causes, and a another, apparently more substantial crisis occurred in 2009, and is again being ignored. Whatever the underlying dissatisfaction, this time the impact is more serious. It undoubtedly is compounded by the financial situation, but I don't think that is everything. John R. Brews 15:46, 11 August 2011 (UTC)

I can't add much to what I already stated above - "I can't pinpoint what is behind the plunge in 2008 but the two other spikes are due to bot activity being stopped (September 2009) and briefly resumed (January 2010)" - except that (1) I think you underestimate the bot contributions to the 2009 and 2010 spikes, (2) the rising flank of the 2008 plunge had a bot component as well and (3) a number of prolific contributors left in 2008, or at least reduced their activity here, but having just joined in myself then, I am not sure of any specific event(s) that catalyzed the drop. To find out more, it's perhaps necessary to dig around the forums or email archives. --Daniel Mietchen 21:51, 15 August 2011 (UTC)

Applied Consciousness Sciences

Hi Daniel: See this discussion that indicates Matt is awaiting some more definitive action from a psychology editor before taking any action in deleting Applied Consciousness Sciences. As indicated on the talk page here and possibly here there is reason to proceed. The author of this article appears to have no great interest in responding to these remarks. John R. Brews 21:57, 9 October 2011 (UTC)

The main problem for me to place the deletion template is that there have been so many modifications to the Editor's role recently, and they are not easy to find (e.g. none of them are linked from the Charter), so I am not entirely sure what the exact procedure is. Will take another look. Pointers appreciated. --Daniel Mietchen 15:05, 10 October 2011 (UTC)

Old Banner Still showing

Daniel, for non-logged-in users the banner announcing the call for nominations and elections back in June 2011 is still showing. Russell D. Jones 16:14, 2 November 2011 (UTC)

Banners often seem to be out of date, and varying between pages. Peter Jackson 11:18, 3 November 2011 (UTC)
I had an occasional look at that over the last few days and didn't find any such wrong banners. But I know they do occur whenever we meddle with SiteNotice, and as far as I remember, this is due to caching. No idea about the deeper workings, though. --Daniel Mietchen 15:57, 7 November 2011 (UTC)

Draft approved which shouldn't be

Alcmaeon/Draft: This page has somehow has "approved" status, but it's a "draft" page and shouldn't be at the approved stage. The Alcmaeon article is approved. Russell D. Jones 21:28, 21 November 2011 (UTC)

I just looked at it, Russell, and it looks OK to me -- just a draft article.... What am I missing? Hayford Peirce 23:49, 21 November 2011 (UTC)
The top banner clearly states "post-approval draft version", which seems to be correct. --Daniel Mietchen 00:17, 22 November 2011 (UTC)
So why don't other approved articles have approved draft pages? Russell D. Jones 14:07, 22 November 2011 (UTC)
Now I see what you mean - it is not that this draft page is approved, but that it is the only draft page listed in that category. That surely is a mistake and should be fixed. Will check. --Daniel Mietchen 14:19, 22 November 2011 (UTC)
Fixed. Thanks for the hint and for insisting. --Daniel Mietchen 14:25, 22 November 2011 (UTC)

Infobox template for planets

It appears that the parameters which are shown in the Tables on the page for the planet Uranus are the ones we should be using in the infobox for the planets. These are somewhat different than those for the dwarf planets so we can't use the same infobox for both. I have presented the parameters in two separate tables, but that procedure need not (should not?) be followed. Ideally, the infobox would tuck in just below the top image, or maybe the image could be the top-most element in the infobox. The only possible addition I could suggest for the parameters is the inclusion of the astronomical / astrological symbol.

Anyway, if you could devise the infobox, your help would be much appreciated. After it is ready, I will fill in the information and put them up on the articles for the respective planets.

James F. Perry 18:19, 28 November 2011 (UTC)

OK, will do. --Daniel Mietchen 10:09, 29 November 2011 (UTC)

Final draft Interview Correio Braziliense

Hi Daniel:

I made some further changes before I noticed you were cutting off further changes. I hope they can be incorporated.

John R. Brews 18:04, 13 January 2012 (UTC)

No worries. Forwarded the latest edits too. --Daniel Mietchen 03:33, 14 January 2012 (UTC)
Daniel: What is known about the point of this exercise for Correio? I think it was a good exercise for CZ in causing a bit of thought about the project. John R. Brews 18:42, 14 January 2012 (UTC)
No response from their end yet, but the expected date of posting was somewhere around next week. --Daniel Mietchen 10:43, 16 January 2012 (UTC)

Update

You forgot to change where it says you're the Managing Editor. Peter Jackson 17:52, 27 November 2014 (UTC)