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Salmonella enterica

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Salmonella enterica
Salmonella typhimurium.jpg
Scientific classification
Kingdom: Bacteria
Phylum: Proteobacteria
Class: Gammaproteobacteria
Order: Enterobacteriales
Family: Enterobacteriaceae
Genus: Salmonella
Species: enterica
Binomial name
Salmonella enterica pathovar typhimurium

Salmonella enterica is a rod shaped, Gram-negative bacterium, and a member of the genus Salmonella.

Contents

Description and significance

Salmonella bacteria were first discovered by an American scientist, Dr. Daniel E. Salmon in 1884. Dr. Salmon isolated the bacteria from the intestines of a pig and called it Salmonella choleraesui. The genus Salmonella is divided into two species, S. enterica and S. bongori. Salmonella enterica are rod shaped Gram-negative bacteria. They are facultative anaerobes. They are very commonly found in raw meat, chicken, and egg shells. Another one of its' habitats is in contaminated water. Once it enters the host, it resides in the intestinal tract of the human or animal. Research done on the genomic sequencing of S. enterica can aid in the effectiveness of medications and vaccinations in treating disease. It is usually isolated on a selective medium such as MacConkey agar, XLD agar, XLT agar, or DCA agar.

The three main serovars of Salmonella enterica are Typhi, Typhimurium, and Enteritidis. Their DNA are anywhere between 95% and 99% similar. Ways that researchers have used to differentiate between the different serovars is by looking at their phage specificity. S. typhi is the serovar responsible for typhoid fever, a lethal disease. This disease is usually found in poor, under developed areas. The most common symptoms are fever, vomiting and possible death. S. typhi is found in contaminated water. A human can become infected by drinking the contaminated water or even by washing other foods with the water. S. typhimurium used to be the most common cause of food poisoning. It has many of the similar symptoms as S. typhi although not usually fatal. Humans with a weak immune system may require antibiotics as treatment. S. enteritidis has recently become the most common cause of food poisoning and gives rise to the same symptoms as S. typhimurium. Additionally, it infects and spreads through flocks of chickens. This causes the Salmonella infection to affect the human intestines once the chicken has been ingested.

Genome structure

Salmonella genome.png

The genome of S. typhi CT18 is made up of a large circular shaped chromosome and two plasmids referred to as pHCM1 and pHCM2. The chromosome is 4.8Mb and the plasmids are 218 kb and 106 kb, respectively. These plasmids have different drug resistant bands. S. typhimurium has one chromosome that is also 4.8Mb in length, but only one plasmid, pSLT, which is smaller than the plasmids of S. typhi. S. typhi TY2 contains one chromosome that is 4.7Mb long, but lacks plasmids with drug resistant bands. This strain was used to develop the vaccine for infections caused by S. typhi.

Psuedogenes are molecules similar to genes, except that they lost their ability to code for proteins. Since they can no longer code for or express proteins, they are considered nonfunctional genes. S. typhi CT18 contains 204 pseudogenes. Nine of these pseudogenes are genes found in S. typhi TY2. TY2 and CT18 have 195 pseudogenes in common and TY2 has 11 different ones.

Cell structure and metabolism

S. enterica are motile, rod shaped bacteria that contain peritrichous flagella and produce hydrogen sulfide. Important molecules that they produce once inside their hosts are specific proteins that causes the cells of the intestinal walls that it is invading to become disorganized. The disorganization of the cells caused by the production of these proteins cause the bacteria to become engulfed. The proteins that are produced by the bacteria staple together the hosts' actin molecules so that it will fold around the bacteria. This protein is referred to as Salmonella invasion protein A (SipA).

New research done at the University of Georgia has found that Salmonella use hydrogen as an energy source. It was originally thought that hydrogen was eliminated from the body as a waste product. New research has discovered that hydrogen is not a waste product; rather it remains in the body and can be used as energy by invading bacteria. When researchers sequenced the genome of Salmonella bacteria they found that they contained three membrane associated enzymes that helped break down hydrogen.

Ecology

Researchers have discovered certain mechanisms that Salmonella bacteria use in order to allow them to survive in harsh and hostile environments. They possess a regulatory system that consists of two parts known as PmrA and PmrB. They use these systems to detect certain stimuli in the environment and then respond to them by either repressing or activating specific gene expression. Researchers additionally discovered that the PmrA/PmrB complex is activated by the presence of iron. This is very important and beneficial for the survival of the bacteria because this complex offers them a protective response. High iron levels that trigger the activation of the PmrA/PmrB complex can be found in soil and water. High levels of iron can also be found in the intestinal tracts of various animals and humans. The activation of this complex by iron helps them protect themselves against the antibiotic polymyxin. Nonetheless, S. enterica can be found in many eukaryotic organisms including humans, animals, birds, and even reptiles. It is excreted in feces and transferred to other organisms or environmental habitats by contaminated water or soil.

S. enterica can survive in environments with a pH value of 4 to 8 and a temperature value between 8 and 45 degrees Celsius. They are found to be very resistant to certain food preserving methods like drying, salting and smoking. However, they are not resistant, and in fact very sensitive to, certain radiations. This is why they love living in damp, wet soil because it protects them from the sun.

Pathology

This photograph depicts the colonial growth pattern displayed by Salmonella typhimurium bacteria cultured on a Hektoen enteric (HE) agar medium; S. typhimurium colonies grown on HE agar are blue-green in color, for this organism is a lactose non-fermenter, but it does produce hydrogen sulfide, (H2S), therefore there can be black-colored deposits present.
Different species of Salmonella can cause a wide range of diseases from gastrointestinal problems to typhoid fever. Usually the strain can be carried in a large range hosts including humans, animals, rodents, and birds. S. typhi, a serovar of S. enterica, will only infect humans. The typhoid fever that it causes kills 500,000 people per year. Other serovars like S. typhimurium infect humans, as well as many other mammalian species. The bacteria enter the host by disturbing the membrane. Once inside, it harms the host by causing the levels of intracellular free calcium to increase and disorganize the cytoplasm of the cell. From the intestines, it is transferred to the liver or the spleen where it continues to grow. Then, it either goes back into the host's intestines, or is excreted in the organisms' feces. It can be spread from the feces by contaminated water, soil, or poor sanitary conditions. Symptoms usually include diarrhea, fever, and abdominal cramps. Strains that are associated with food-borne infections are usually not treated with antibiotics, but will resolve themselves over time. The typhoidal strains usually do require treatment by antibiotics, and possibly hospitalization. Some of the antibiotics have been used in the beef and poultry industries. This has caused for a strain of bacteria to be resistant to the antibiotics. Suggested ways to prevent infections from Salmonella bacteria include making sure all foods are completely cooked, washing all kitchen surfaces, dishes, and hands thoroughly, and refrigerating foods immediately.

A most famous case of Salmonella is one by Mary Mallon. She was the first known American to be a healthy carrier of Typhoid fever. People acquire Typhoid fever after eating or drinking water or food that has been touched by carriers of the disease. A carrier is one who has had Typhoid fever in the past and survived, but yet has the typhoid bacteria in their system without any symptoms. Since the bacteria are still within them, carriers will still excrete the bacteria in their feces, which will then spread and infect other organisms. Mary Mallon, a carrier of the disease, was a cook in New York City in the early 1900's. She infected 24 people with typhoid fever. She then switched jobs and infected and killed 11 more people. She changed jobs multiple times, each time infecting people with typhoid fever. A total of 47 people were infected by Mary Mallon and three of them died. Mary denied that she was the cause of the infection, insisting that she was never sick with typhoid fever. Typhoid Mary has become a term used by many to describe a carrier or a disease that causes harm to others around them and yet refuses to take responsibility. In addition, this one case shows how fast the Salmonella bacteria can spread from one person if proper sanitation methods are not kept.

Application to Biotechnology

Researchers have discovered that Salmonella bacteria can be used to destroy cancerous tumors that cannot be cured by chemotherapy. Researchers use a mutant strain of S. typhimurium so that it will be harmless to the host. Bacteria live very comfortably in tumors due its' environment which is very low in oxygen. Researchers are working on injecting the bacteria with certain cell toxins that would be released once inside the cancerous tumor. Additionally, the bacteria have very strong flagella that help them propel through the tissue to the targeted area. Medication requires the presence of networks of blood vessels in helping them travel. If a tumor is found to be very deep within the tissue and not near any blood vessels, it makes it very difficult for the drugs to reach them. However, the Salmonella bacteria do not require blood vessels for their travels. Their flagella system is like motors that allow them to travel to areas that are embedded deep within tissues. Once inside the tumor, the bacteria are programmed to start producing drugs that would destroy the cancerous cells. L-aribinose triggers the production of such compounds.

Salmonella, as well as other bacteria, normally infect their host by delivering proteins through a molecular needle called a type three secretion system. This molecular needle is what researchers are using to help fight cancer. Through the use of genetic engineering, researchers have modified the protein that the Salmonella bacteria normally secrete, so that it will not harm the host. Instead, the bacteria were engineered to produce a protein known as NY-ESO-1. This protein, which is not found in healthy cells, allows the immune system to detect it as foreign and then work to eradicate all of the cells which contain it, mainly the cancer cells. The use of S. typhimurium can greatly aid in the battle against cancer, in ways in which medication failed to do, thus far.

Current Research

"Salmonella enterica With a Reduced Susceptibility to Ciprofloxacin"

In May of 2005, an 18 year old girl, just coming back to Kuwait from India, was found to have abdominal cramps and a high fever. She went for medical help where she had blood drawn for culture. The results of her blood test showed the growth of [[S. Paratyphi A]], a serotype of Salmonella enterica. Further testing proved that the microbe was sensitive to ciprofloxacin. The young girl was prescribed with this medication and told to take it orally two times a day. After consistently taking the medication for one week, the girl still did not show any signs of recovery. She was sent to Infectious Disease Hospital where she experienced a high fever, abdominal pain, and hepatomegaly for ten days. They immediately tested her for the presence of the malaria parasite, all which came back negative. They provided her with intravenous ceftiaxone, due to her failed response to ciprofloxacin. The patient responded to the new medication within three days and was discharged after nine days with no relapse. This article is important in that it points out how common it is becoming for strains of typhoid salmonella to be resistant to certain medications and therefore cause the treatment to fail. In 1992 in the United Kingdom, the first case of typhoid fever that was resistant to ciprofloxacin was found. Previously, the strain was found to be resistant to both ciprofloxacin and ceftiaxone, while this case in Kuwait was only resistant to ciprofloxacin. Flouroquinolones are the best way to treat infections by different microbes that cause enteric fevers. The increased resistance to it causes a major barrier for the medical community. Resistance is hypothesized to be caused by mutations in DNA gyrase. More research needs to be done on the resistance of typhoid salmonella to fluoroquinolones.

"Salmonella typhi Membrane Proteins Cause Oedema and Hyperalgesia"

Salmonella typhi requires the presence of iron in the host in order to grow and proliferate. However, humans have developed a system that protects the body by preventing the microbe from acquiring its needed iron. The microbe, as a result, expresses regulons to aid in their detection of certain environmental stimuli and to develop a way that they can survive the environmental stress.

An experiment was done in which researchers have created two different environments: one with iron availability and one with no iron availability. Salmonella typhi is known to have proteins on the surface of the cell that are called iron-regulated outer membrane proteins (IROMPs). These proteins have different expressions depending on the environment that they are in (i.e with or without iron). In this experiment, they measured the inflammatory potential of these proteins. In the rats that were used in the study, the inflammation occurred in the form of paw oedema. They tested the inflammation responses of the IROMPs by injecting each paw of the rat with a different saline solution. The left paw acted as the control and so was just injected with normal saline. The right paw was injected with normal saline that contained protein. The rats paw was then placed in warm water and was removed when the rat started to show signs of struggle. The result was that the paw that contained the IROMPs could only withstand the warm water for a much shorter time than the control paw. This was how they tested for hyperalgesia. Hyperalgesia activates protein kinase C by increasing the levels of diacylglyserol. This causes changes in pain perception. The study could prove beneficial in that it allowed researchers to examine the possible use of IROMPs as possible vaccines against different strains of Salmonella, since they have seen that IROMPs have increased cellular and humoral immunity.

"Putting Typhoid Vaccination on the Global Health Agenda"

Typhoid fever is caused by S. typhi, a serovar of Salmonella enterica. Although not of a concern in the wealthier industrial countries, it causes a high death rate in the underdeveloped countries. The World Health Organization claims that there are 500,000 to 600,000 deaths from typhoid fevers yearly in these countries, which is slightly lower than the cervical cancer death rate. There has been great concern over the development of vaccines behind HPV, the cause of cervical cancer, but concern for typhoid vaccination is currently not as of great concern. Possible reasons for this are due to the increased resistance by the bacteria to many of the antibiotics used. Additionally, many of the developing countries that are experiencing the high typhoid death rate may not know exactly what the source of the fever may be. Due to insufficient funds, laboratory work is not as easily done and many people rely on private health care providers when they fall ill. Officials have paid attention to finding vaccines for diseases that strike children particularly under the age of five, however, typhoid fever is not such an illness that attacks younger children, and so policymakers tend to neglect it.

In industrialized countries, proper water and sanitation systems have decreased the likelihood of typhoid fever outbreaks. However, the non-industrialized countries that lack such funds that would aid in better sanitation systems, still are affected. Over the past two decades, two new typhoid vaccines have developed. Vi polysaccharide offers 70% protection for three years. Ty21 offers 53-96% protection and lasts for about seven years. Since the development of these vaccines, it was recommended that school age children be immunized, however, only China and Vietnam have incorporated this into their immunization programs.

New findings by the Diseases of the Most Impoverished Program have shown that three areas, Karachi, Kolkata, and North Jakarta, have the highest typhoid rates in children ages five to fifteen. Additionally, they found that 90% of the cases of typhoid fever are found in areas with extremely poor water and sanitation systems. Another serovar of Salmonella enterica, Salmonella Paratyphi A, is the cause of enteric fever in these areas, as well. These findings can help offer possible solutions. The current typhoid vaccines cannot be given to infants. As a result, vaccines that are administered in school should be given to young children who are not at a high risk for typhoid fever. In areas where typhoid fever is very localized, both school and community vaccination should be offered to young children. Another factor to take into consideration is that vaccines should target both Salmonella paratyphi and Salmonella typhi, since both cause enteric fever. Lastly, it has been found that Salmonella typhi are resistant to ampicillin,chloramphenicol, and trimethoprim-sulfamethoxazole. This will only contribute to the difficulties in finding an effective treatment. With this information, officials in Pakistan and Indonesia have introduced the Vi vaccine to be administered in schools to young children. However, the article points out that if typhoid fever is to be controlled across the world, policymakers need to recognize and acknowledge its severity and how rampant it truly is.

References

Dimitrov, T., Udo, E., Albaksami, O., Kilani, A., Shehab, E. "Ciprofloxacin treatment failure in a case of typhoid fever caused by Salmonella enterica serotype Paratyphi A with reduced susceptibility to ciprofloxacin." Journal of Medical Microbiology.2007. Volume 56. p 277-279.

Chanana, V., Sehgal, R., Rishi, P. "Salmonella typhi iron-regulated outer-membrane proteins cause oedema and hyperalgesia during inflammation induced in a rat model." Journal of Medical Microbiology. 2005. Volume 54. p. 421-423.

DeRoeck, D., Jodar, L., Clemens, J. "Putting Typhoid Vaccination on the Global Health Agenda." The New England Journal of Medecine. 2007. Volume 357. p 1069-1071.

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