Prokaryote phylogeny and evolution/Bibliography

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A list of key readings about Prokaryote phylogeny and evolution.
Please sort and annotate in a user-friendly manner. For formatting, consider using automated reference wikification.
  • Gogarten JP Townsend JP (2005) Horizontal gene transfer, genome innovation and evolution. Nat Rev Microbiol. 9:679-87. PMID 16138096. One article in a whole issue of the journal Nature Reviews Microbiology largely devoted to HGT.
  • Daubin V et al. (2003) Phylogenetics and the cohesion of bacterial genomes. Science 301:829-32 PMID 12907801
  • Eisen JA, Fraser CM (2003) Viewpoint phylogenomics: intersection of evolution and genomics. Science 300:1706-7 PMID 12805538
  • Ge F et al. (2005) The Cobweb of Life revealed by genome-scale estimates of horizontal gene transfer. PLoS Biology 3:e316 PMID 16122348
  • Henz SR et al. (2005) Whole-genome prokaryotic phylogeny. Bioinformatics 21:2329-35 PMID 15166018
  • Lerat E et al. (2005) Evolutionary origins of genomic repertoires in bacteria. PLoS Biology 3:e130 PMID 15799709
  • Urwin R, Maiden MC (2003) Multi-locus sequence typing: a tool for global epidemiology. Trends Microbiol 11:479-87 PMID 14557031
  • Adoutte A et al. (2000) The new animal phylogeny: reliability and implications. Proc Natl Acad Sci USA 97:4453-6 PMID 10781043
  • Delsuc F et al.(2005) Phylogenomics and the reconstruction of the tree of life. Nat Rev Genet 6:361-75. PMID 15861208
  • Steenkamp ET et al. (2006) The protistan origins of animals and fungi. Mol Biol Evol 23:93-106 PMID 16151185 (Open access.)
  • Thomas CM, Nielsen KM. (2005) Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat Rev Microbiol 3:711-21. Review. PMID 16138099