Pachygyria (from the Greek "pachy" meaning "thick" or "fat" gyri) is a congenital malformation of the cerebral hemisphere. It results in unusually thick convolutions of the cerebral cortex. Typically, children have developmental delay and seizures, the onset and severity depending on the severity of the cortical malformation. Infantile spasms are common in affected children, as is intractable epilepsy.
Pachygyria, lissencephaly (smooth brain), and polymicrogyria (multiple small gyri) are all the results of abnormal neuronal migration. The abnormal migration is typically associated with a disorganized cellular architecture, failure to form six layers of cortical neurons (a four-layer cortex is common), and functional problems. The abnormal formation of the brain may be associated with seizures, developmental delay, and mental dysfunctions.
Normally, the brain cells begin to develop in the periventricular region (germinal matrix) and then migrate from medial to lateral, to form the cerebral cortex.
The term 'pachygyria' does not directly relate to a specific malformation but rather is used to generally describe physical characteristics of the brain in association with several neuronal migration disorders; most commonly disorders relating to varied degrees of lissencephaly. Lissencephaly is present in 1 of 85,470 births and the life span of those affected is short as only a few survive past the age of 20.  Pachygyria is a condition identified by a type of cortical genetic malformation. Clinicians will subjectively determine the malformation based on the degree of malposition and the extent of thickened abnormal grey differentiation present. 
Different imaging modalities are commonly used for diagnosis. Computed tomography (CT) is a lower-resolution imaging modality available, however, cerebral cortex malformations are more easily visualized in vivo and classified using high-resolution magnetic resonance imaging (MRI) equipment.  Diffuse pachygyria (a mild form of lissencephaly) can be seen on an MRI as thickened cerebral cortices with few and large gyri and incomplete development of the Sylvian fissures 
Malformations of the cerebral cortex can cause:
- Fetal lethality
- Major developmental disabilities
- Reproductive damage
- Severe epilepsy 
- Reduced longevity
- Varying degrees of mental retardation
- Intractable epilepsy
- Spasticity 
Connections to Epilepsy, Lissencephaly, and Subcortical Band Heterotopia
Various degrees of intensity and locations of epilepsy are associated with malformations of cortical development. Researchers suggest that approximately 40% of children diagnosed with drug-resistant epilepsy have some degree of cortical malformation.
Lissencephaly (to which pachygyria is most closely linked) is associated with severe mental retardation, epilepsy, and motor disability. Two characteristics of lissencephaly include its absence of convolutions (agyria) and decreased presence of convolutions (pachygyria).  The types of seizures associated with lissencephaly include:
- Persisting spasms
- Focal seizures
- Tonic seizures
- Atypical seizures
- Atonic seizures 
Other possible symptoms of lissencephaly include telecanthus, estropia, hypertelorism, varying levels of mental retardation, cerebellar hypoplasia, corpus callosum aplasia, and decreased muscle tone and tendon reflexes.  Over 90% of children affected with lissencephaly have seizures. 
Patients with subcortical band heterotopia (another disorder associated with pachygyria) typically have milder symptoms and their cognitive function is closely linked to the thickness of the subcortical band and the degree of pachygyria present. 
The degree of cerebral cortex malformation caused by genetic mutations is classified by the degree of malposition and the extent of faulty grey matter differentiation. 
Neuronal migration disorders are generally classified into three groups:
- lissencephaly/subcortical band heterotopia
- ‘other’ heterotopias 
The ‘other’ types are associated with corpus callosum agenesis or cerebellar hypoplasia while the cobblestone lissencephalies are associated with eye and muscle disorders.  Classical lissencephaly, also known as type I or generalized agyria-pachygyria, is a severe brain malformation of a smooth cerebral surface, abnormally thick (10-20mm) cortex with four layers, widespread neuronal heterotopia, enlarged ventricles, and agenesis or malformation of the corpus callosum.  Classical lissencephaly can range from agyria to regional pachygyria and is usually present along with subcortical band heterotopia (known as ‘double cortex’ to describe the circumferential bands of heterotopic neurons located beneath the cortex).  Subcortical band heterotopia is a malformation slightly different from lissencephaly that is now classified under the agyria-pachygyria-band spectrum because it consists of a gyral pattern consistent with broad convolutions and an increased cortical thickness.  The established classification scheme for lissencephaly is based on the severity (grades 1-6) and the gradient. 
- Grade 1: generalized agyria
- Grade 2: variable degree of agyria
- Grade 3: variable degree of pachygyria
- Grade 4: generalized pachygyria
- Grade 5: mixed pachygyria and subcortical band heterotopia
- Grade 6: subcortical band heterotopia alone
- Gradient ‘a’: from posterior to anterior gradient
- Gradient ‘b’: from anterior to posterior gradient 
Grade 1 and Grade 4 are very rare. Grade 2 is observed in children with Miller-Dieker syndrome (a combination of lissencephaly with dysmorphic facial features, visceral abnormalities, and polydactyly). The most common lissencephaly observed, consisting of frontotemporal pachygyria and posterior agyria, is Grade 3.  Another malformation worth mentioning because of its connections to pachygyria is polymicrogyria. Polymicrogyria is characterized by many small gyri separated by shallow sulci, slightly thin cortex, neuronal heterotopia and enlarged ventricle and is often superimposed on pachygyria. 
Pachygyria is caused by a breakdown in the fetal neuronal migration process due to genetic or possibly environmental influences. The cerebral cortex will typically have only four developed layers. One of the best known and most common types of neuronal migration disorders is lissencephaly (a diffuse cortical malformation relating directly to agyria and pachygyria).  Incomplete neuronal migration during the early fetal brain development is the precursor to lissencephaly.  Should neurons follow an abnormal migration during development possible cortical malformations include classical lissencephaly (as stated above) and subcortical band heterotopia with an agyria-pachygyria band spectrum. 
Normal Neuronal Migration
- First stage: stem cells proliferate and differentiate into neurons or glial cells within the forebrain and the ventricular and subventricular zones lining the cerebral cavity
- In humans this stage lasts from gestational weeks 5-6 to 16-20
- Second stage: migration away from the origin in a radial fashion along the glial fibers from the periventricular region of the ganglionic eminences towards the pial surface
- The generations settle into a pattern within the cortical plate during this stage
- In humans this stage lasts from gestational weeks 6-7 to 20-24
- Third stage: apoptosis and synaptogenesis within the six cortical layers to develop correct cortical organization
Most types of incomplete neuronal migration to the cortex occur during the third and fourth gestational months.  The abnormal migration of the neurons causes them to not reach their proper final destinations which results in failure of the sulci and gyri to form. 
The stage of cortical development at which migration is arrested is directly related to the level of structural malposition. 
One of the most critical stages in brain development is when the post-mitotic neurons migrate from the ventricular zone to form the cortical plate.  Migration arrested toward the latter part of development usually restricts the abnormal cell position to the cortex level. 
Neuronal migration disorder caused by genetic mutations
Several genetic mutations have been isolated and linked to specific malformations of the cerebral cortex.  Genes shown to cause lissencephaly include both autosomal and X-linked genes.  Below, the mutations of LIS1 or DCX genes are discussed as they are most commonly linked to neuronal migration disorders including lissencephaly-pachygyria and subcortical band heterotopia. 
LIS1 is responsible for the autosomal form of lissencephaly.  Mutations of the LIS1 gene are associated with about 80% of those affected with lissencephaly.  LIS1 was the first human neuronal migration gene to be cloned. It is responsible for encoding the alpha subunit of the intracellular Ib isoform of platelet-activating factor acetylhydrolase. It is located on chromosome 17p13.3 and has 11 exons with a coding region of 1233bp. LIS1 protein appears to interact with tubulin to suppress microtubule dynamics. The protein is highly conserved and studies have shown that it participates in cytoplasmic dynein-mediated nucleokinesis, somal translocation, cell motility, mitosis, and chromosome segregation.  LIS1 encodes for a 45kDa protein called PAFAH1B1 that contains seven WD40 repeats required for proper neuronal migration.  The LIS1 gene encodes for a protein similar to the β subunit of G proteins responsible for degrading bioactive lipid platelet-activating factor (PAF).  This leads to theories that LIS1 might exert its effect on migration through microtubules. Specific concentrations of PAF may be necessary for optimal neuronal migration by influencing cell morphology adhesion properties. Studies have shown that addition of PAF or inhibition of platelet-activating factor acetylhydrolase (PAF-AH) decreases cerebellar granule cell migration in vitro. Addition of PAF to hippocampal cells have shown growth cone collapse and neurite retraction. LIS1 knockout homozygous null mice die during embryogenesis and heterozygous mice survive with delayed neuronal migration confirmed by in vitro and in vivo cell migration assays.  Most lissencephaly cases are associated with deletions of mutations of the LIS1 gene and the results are usually more severe in the posterior brain regions. 
One study showed that of an isolated group of patients with lissencephaly, 40% resulted from an LIS1 deletion and another 25% resulted from an intragenic mutation of the gene. Patients with missense mutations tend to have less severe symptoms, pachygyria, and rare cases of subcortical band heterotopia. Truncated (shortened) mutations of LIS1 tend to cause severe lissencephaly. 
Doublecortin (DCX or XLIS) mutations are responsible for X-linked disorders.  While LIS1 mutations tend to cause severe malformations in the posterior brain, DCX mutations focus much of their destruction on anterior malformations and are linked to lissencephaly in males and subcortical band heterotopias in females.  Women with DCX mutations tend to have an anteriorly-predominant subcortical band heterotopia and pachygyria.   DCX was the first known gene causing X-linked lissencephaly and subcortical band heterotopia. It is found on chromosome Xq22.3-q23 and has nine exons that code for 360 proteins. DCX is expressed exclusively in the fetal brain. 
Because pachygyria is a structural defect no treatments are currently available other than symptomatic treatments, especially for associated seizures. Another common treatment is a gastrostomy (insertion of a feeding tube) to reduce possible poor nutrition and repeated aspiration pneumonia. 
Scientists at the Sanjay Gandhi Postgraduate Institute of Medical Sciences in Lucknow, India, discovered a rare situation, four siblings with neuronal migration disorders, which they studied and compared to other known cases in the field highlighting the need for revision of the current lissencephaly classification scheme. No family history of mental retardation was reported and all four siblings were born to nonconsanguineous parents. The first child had developmental delays and two non-recurrent tonic convulsions as an infant. An MRI performed at age five showed generalized pachygyria with only a few broad gyri in the frontal and temporal lobes. The second child also had developmental delays and mild retardation, but more infantile seizures. Her MRI revealed pachygyria of the frontal and temporal lobes. The third and fourth child (one female and one male) did not have imaging performed but showed developmental similarities to their siblings. The authors hypothesize that autosomal recessive pattern of inheritance is the cause because all four children of different sexes have similar neuronal migration abnormalities and are from the same non-afflicted parents. After they thoroughly reviewed other studies the authors suggested a new classification involving frontotemporal pachygyria with a normal head circumference which can be broken into subgroups based on the involved lobes and neurological features. 
A study dedicated to describing congenital fibrosis of extraocular muscles (a complex strabismus syndrome typically occurring in isolation and resulting from dysfunction of all of part of cranial nerves III and IV) in a group of four patients noted one 12 year old male patient with a history of asphyxia, microcephaly and psychomotor retardation whose craniocerebral CT scan revealed symmetrical expansion of the ventricular system with enlargement of the subarachnoid area as well as pachygyria. 
Pachygyria has not previously been reported as associated with non-ketotic hyperglycinaemia but has been recognized as a radiological feature in children with Zellweger syndrome. This study focused on the second child born to non-consanguineous Caucasian parents. At two days old the child became lethargic, hypotonic and difficult to rouse. The child was incubated and ventilated at the hospital once hypoventilation was noticed. A septic screen and a cerebral CT scan were performed and the CT scan results were abnormal, showing poor grey-white differentiation and prominent cerebral spinal fluid spaces. While the child’s head circumference was relatively normal her anterior fontanelle was notably small. Her small pupils did constrict in response to light. She did not breathe above the ventilator rate and experienced occasional hiccoughs. Doctors were able to produce a flexor withdrawal to pain from the lower limbs. She had occasional myoclonic jerks but no overt seizure activity. The CT scan revealed pachygyria and partial agenesis of the corpus callosum. Thirty-six hours after the child’s death urine analysis was used to give a diagnosis of non-ketotic hyperglycinaemia. Her urine glycine level was grossly elevated and the CSF glycine was at least 100μmol/L. When compared to other studies, agenesis of the corpus callosum was seen in 6 of the 15 patients in literature findings of the same diagnosis. Gyral abnormalities were reported in 6 of the patients but were not described in detail. Biochemical syndromes previously described as associated with pachygyria, polymicrogyria, and heterotopia include glutaric aciduria type II, multiple peroxisomal oxidative deficiency, Zellweger syndrome, and now include non-ketotic hyperglycinaemia. 
Microcephalic osteodysplastic primordial dwarfism (MOPD) type II is an autosomal multisystem disorder including severe pre- and post-natal growth retardation, microcephaly with Seckel syndrome-like facial appearance, and distinctive skeletal alterations. Usually those affect have mild to moderate mental retardation. This female child is the first born of nonconsanguineous parents at 35 weeks gestation through a cesarean section due to intrauterine growth retardation. She had a retarded psychomotor development and was repeatedly hospitalized during her first six months of life due to recurring respiratory infections. Her electroencephalography, auditory brainstem response evaluation, and chromosomal analysis were relatively normal. A brain MRI revealed thickened cerebral cortices with few and large gyri prominently in the frontal and posterior temporal regions, incomplete development of the Sylvian fissures, and dilatation of the posterior horns of the lateral ventricles (colpocephaly). Usually only mild brain malformations are associated with MOPD type II. The imaging findings of this child’s brain most likely represent diffuse pachygyria, a mild form of lissencephaly. This child’s neuro-developmental findings were mild when compared to previous reports of a well-defined chromosome 17-linked and X-linked lissencephaly in a bedridden patient with severe developmental delays. 
- Guerrini R (2005). "Genetic malformations of the cerebral cortex and epilepsy". Epilepsia 46 Suppl 1: 32–7. DOI:10.1111/j.0013-9580.2005.461010.x. PMID 15816977. Research Blogging.
- Guerrini R, Marini C (2006). "Genetic malformations of cortical development". Exp Brain Res 173 (2): 322–33. DOI:10.1007/s00221-006-0501-z. PMID 16724181. Research Blogging.
- Pieh C, Goebel HH, Engle EC, Gottlob I (2003). "Congenital fibrosis syndrome associated with central nervous system abnormalities". Graefes Arch. Clin. Exp. Ophthalmol. 241 (7): 546–53. DOI:10.1007/s00417-003-0703-z. PMID 12819981. Research Blogging.
- Phadke, S., "et al." (2007). "Pachygyria in a Girl with Microcephalic Osteodysplastic Primordial Short Stature Type II." Brain and Development. 27:237-240.
- Cardoso C, Leventer RJ, Matsumoto N, et al (2000). "The location and type of mutation predict malformation severity in isolated lissencephaly caused by abnormalities within the LIS1 gene". Hum. Mol. Genet. 9 (20): 3019–28. PMID 11115846.
- Dobyns WB, Truwit CL (1995). "Lissencephaly and other malformations of cortical development: 1995 update". Neuropediatrics 26 (3): 132–47. PMID 7477752.
- Kato M, Dobyns WB (2003). "Lissencephaly and the molecular basis of neuronal migration". Hum. Mol. Genet. 12 Spec No 1: R89–96. PMID 12668601.
- Riney CJ, Harding B, Harkness WJ, Scott RC, Cross JH (2006). "Hippocampal sclerosis in children with lesional epilepsy is influenced by age at seizure onset". Epilepsia 47 (1): 159–66. DOI:10.1111/j.1528-1167.2006.00382.x. PMID 16417544. Research Blogging.
- Fletcher JM, Bye AM, Nayanar V, Wilcken B (1995). "Non-ketotic hyperglycinaemia presenting as pachygyria". J. Inherit. Metab. Dis. 18 (6): 665–8. PMID 8750602.
- Ozawa H, Takayama C, Nishida A, Nagai T, Nishimura G, Higurashi M (2005). "Pachygyria in a girl with microcephalic osteodysplastic primordial short stature type II". Brain Dev. 27 (3): 237–40. DOI:10.1016/j.braindev.2004.06.007. PMID 15737708. Research Blogging.
- Phadke SR, Girisha KM, Phadke RV (2007). "A new autosomal recessive disorder of bilateral frontotemporal pachygyria without microcephaly: report of a case and review of literature". Neurol India 55 (1): 57–60. PMID 17272902.